BAC Information

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BAC

Clone NameMSMg01-109D17
Chromosome5 (Build37)
Map Location 57,103,728 - 57,104,274
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109D17.T7 (MSMg01no109_d17.b1)MSMg01-109D17.TJ (MSMg01no109_d17.g1)
ACCAG322469AG322470
length718726
length of high quality
(start - end)
568 (45 - 612)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no109_d17.b1 PHD_FILE: MSMg01no109_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:22 2005CHROMAT_FILE: MSMg01no109_d17.g1 PHD_FILE: MSMg01no109_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTCATAATTGCGGCGCTAAACGACTCACTATTTCCAGAAATCCGCGGA
ATTCTAAGAGGTTCCATGTCTGTGTGTAACAGAAAGGACATTATTATATG
TAAAAATATTTTCATCATAATACTTTGAAATATTGATCATTGTCTATACT
GCCTGGGAATCTTATGTTTCTTTATTCTTAGGAATGAACTGAAATTTTAA
TATAATTAACTTTAAAAATACATAGTTTATTTGAAGATATTAATATATGA
ATTCTAACTTCATCATCTGAAGTTTCTTTCATGAAACTATCACTTTATTC
TCTGCATACTGGGTGTAAACCAAATATAAGAGAAGTCACAGCATATGCAA
GAATTTCAATGATCAAAGTGATTTAAGTATTAGACGGTAATAGAAAAAGT
GAGTAGTGAAAGGTTAGGAGAGAAAAATCCACTTTGGAATATCCATTACT
AGACAAAAACTAAGAACATTCATTTCAAAGACTTCTCCATAGACATATTT
GTTTTCCATGATAAAAAAAAATTAGAAAAGCAACTTAACTTCTGTTTACC
AACTTATGTGCAATCAATAGGATTAATCCAATGGCATGCCAATCATTTAT
TCCTGTGGGTGGATACAGCGAATTGAGCCTGCTGTAAATAATCCACTTGT
TGGGTCACACAATCATCAACTATTGTTACTTGCCCGGAGAAAATGGATGA
ATGAATGGCAACATAGTC
TAACGATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAATAAAAGGAGATCAATGGGAT
ACAGATTTGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATCTAAGTGACCCTAAAACTTACACCAGAGTACTCCTAAACCTG
ATAAAGAGCCTCAATGAATTAGCTGTATATAAAATTAACTTACACAAGTC
AATGGCCTTTCCCTACACAAAGGATAAACAAGCTGAGAAATAAATTAGGG
AAACAACACCCTTGTCAATAGTCACATTTAATATAAAATACCTTGGCATG
ACTCTAACTAAGGAAATAAAGGTCTGTATGATAAGAATTTCAAGTCTCTG
AAGAAAGAAATTAAAGATCTCAGAAGATGGAAAGATCTCTCATGCTCATG
GATTGTCAGGATAAATATAGTACAAACGTCTATCTTGCCAAAAGTAATCT
ACATATTCAATGCTATCCCCATTAAAATTCCTTCTCTATTTCTCCAACGA
TTTATACAGAACAATCTATTAATTCTTCTGGATAATCACCAAATCTATTT
TATCTTACCCTCTTCTTAAGGATTAAAGAACTTCTGCTGAAAATAATCAT
ACCTGACCAAAAAATGAATAACATAACAAATTTGCGTATAACATTTGCTT
GGCCCTTGCTATTTTGACGACCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_d17.b1 MSMg01no109_d17.b1 CHROMAT_FILE:
MSMg01no109_d17.b1 PHD_FILE: MSMg01no109_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:22 2005
         (568 letters)



>mm_chr5_57103507_57104474
          Length = 968

 Score = 1050 bits (543), Expect = 0.0
 Identities = 546/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 22  atgtctgtgtgtaacagaaaggacattattatatgtaaaaatattttcatcataatactt 81
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 222 atgtctgtgtgtaacagaaaggacatttttatatgtaaaaatattttcatcataatactt 281

                                                                       
Query: 82  tgaaatattgatcattgtctatactgcctgggaatcttatgtttctttattcttaggaat 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgaaatattgatcattgtctatactgcctgggaatcttatgtttctttattcttaggaat 341

                                                                       
Query: 142 gaactgaaattttaatataattaactttaaaaatacatagtttatttgaagatattaata 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaactgaaattttaatataattaactttaaaaatacatagtttatttgaagatattaata 401

                                                                       
Query: 202 tatgaattctaacttcatcatctgaagtttctttcatgaaactatcactttattctctgc 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tatgaattctaacttcatcatctgaagtttctttcatgaaactatcactttattctctgc 461

                                                                       
Query: 262 atactgggtgtaaaccaaatataagagaagtcacagcatatgcaagaatttcaatgatca 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atactgggtgtaaaccaaatataagagaagtcacagcatatgcaagaatttcaatgatca 521

                                                                       
Query: 322 aagtgatttaagtattagacggtaatagaaaaagtgagtagtgaaaggttaggagagaaa 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aagtgatttaagtattagacggtaatagaaaaagtgagtagtgaaaggttaggagagaaa 581

                                                                       
Query: 382 aatccactttggaatatccattactagacaaaaactaagaacattcatttcaaagacttc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aatccactttggaatatccattactagacaaaaactaagaacattcatttcaaagacttc 641

                                                                       
Query: 442 tccatagacatatttgttttccatgataaaaaaaaattagaaaagcaacttaacttctgt 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tccatagacatatttgttttccatgataaaaaaaaattagaaaagcaacttaacttctgt 701

                                                                       
Query: 502 ttaccaacttatgtgcaatcaataggattaatccaatggcatgccaatcatttattcctg 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttaccaacttatgtgcaatcaataggattaatccaatggcatgccaatcatttattcctg 761

                  
Query: 562 tgggtgg 568
           |||||||
Sbjct: 762 tgggtgg 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)