Query= MSMg01no110_c12.b1 MSMg01no110_c12.b1 CHROMAT_FILE:
MSMg01no110_c12.b1 PHD_FILE: MSMg01no110_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:38 2005
(584 letters)
>mm_chr5_49010482_49011465
Length = 984
Score = 1098 bits (568), Expect = 0.0
Identities = 577/580 (99%)
Strand = Plus / Minus
Query: 5 gaattctttaataacttctgatgagttttagatgtcatagaatggcacatctggctgata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattctttaataacttctgatgagttttagatgtcatagaatggcacatctggctgata 725
Query: 65 caattggcctctcagtatctcagcagccttatttctaactactcactgacttgaactgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 caattggcctctcagtatctcagcagccttatttctaactactcactgacttgaactgat 665
Query: 125 ttattcccaattttgtggagtttctaacaactccccaaatacatcatacatctgtaacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttattcccaattttgtggagtttctaacaactccccaaatacatcatacatctgtaacat 605
Query: 185 ccatgtctttcattgggcatcacctctatctagaattctagttttaactttattaaatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccatgtctttcattgggcatcacctctatctagaattctagttttaactttattaaatat 545
Query: 245 aatgatccttgattatcatttaaggctctggagtacaaaaggtccctagaggatacattt 304
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 544 aatgatccttgagtatcatttaagactctggagtacacaaggtccctagaggatacattt 485
Query: 305 atatagtcctagatgtggctgcttgtgaaaagcagatgcatgttttatttagttaggtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atatagtcctagatgtggctgcttgtgaaaagcagatgcatgttttatttagttaggtag 425
Query: 365 caacagcagcagcacccatttctatgggaaataacataccttggaatcacctttctacca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caacagcagcagcacccatttctatgggaaataacataccttggaatcacctttctacca 365
Query: 425 ctaacctagtaaaaagtgtatatccttgtaaaactcactccgctactgtggttctaaatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctaacctagtaaaaagtgtatatccttgtaaaactcactccgctactgtggttctaaatt 305
Query: 485 tctgtttgccaacaacacgatctttaagctaaatattttccagattctgtcctgcttcta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctgtttgccaacaacacgatctttaagctaaatattttccagattctgtcctgcttcta 245
Query: 545 ttttctgtgtcctttctctaggagcaacacatttcagagt 584
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttttctgtgtcctttctctaggagcaacacatttcagagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_c12.g1 MSMg01no110_c12.g1 CHROMAT_FILE:
MSMg01no110_c12.g1 PHD_FILE: MSMg01no110_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:38 2005
(501 letters)
>mm_chr5_48885944_48886845
Length = 902
Score = 924 bits (478), Expect = 0.0
Identities = 496/502 (98%), Gaps = 1/502 (0%)
Strand = Plus / Plus
Query: 1 aatcactacaaaacataacaacccggaggtgagctgccagagtgattcctcacagcatgt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcactacaaaacataacaaccctgaggtgagctgccagagtgattcctcacagcatgt 260
Query: 61 atgaatggattgtctctgttttctttgtaaacataaataactttctaacaagatcagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaatggattgtctctgttttctttgtaaacataaataactttctaacaagatcagact 320
Query: 121 atcttttaaaagacacaaaattggattgtttttttattagcattatgcttgtcattacca 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 atcttttaaaagacacaaaattggattgtctttttattagcattatgcttgtcattacca 380
Query: 181 tagtagatcagatggcctattaagacagtagctattatttatttggtgatctaatcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtagatcagatggcctattaagacagtagctattatttatttggtgatctaatcacaa 440
Query: 241 gagacttttttcagatgaagaaaatgaaaagaatattgcccaatattatatatacagata 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggacttttttcagatgaagaaaatgaaaagaatattgcccaatattatatatacagata 500
Query: 301 taacctatactagagctgataagggagagaaggatggaaacggagagtgtgattgaattt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 taacctatactagagctgataagggagagaaggatggaaatggagagtgtgattgaattt 560
Query: 361 acccattaaagcagatcagaaaaaaaaaatctaatcaggaaaggcaaacccagagagtga 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 acccattaaagcagatcagaaaaaaagaatctaatcaggaaaggcaaacccagagagtga 620
Query: 421 ttatactggatactttttt-caaaagtaatgaaacaaagaaagaagaagtttggcctata 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatactggatactttttttcaaaagtaatgaaacaaagaaagaagaagtttggcctata 680
Query: 480 tcagttcacttggttaaaaacg 501
||||||||||||||||||||||
Sbjct: 681 tcagttcacttggttaaaaacg 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
