NGGAGGGGATTTTNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCCTAACACACGGAGATTCTCTAGATACT
TAAAAGTTACACTCATATAAGAATTTAGCAAGGCCTAGGAAATAGGGGGG
TTGTGATATTGCATTATTCATGAGGCCTGCCAAGAGCAGAACACCCCCCC
CCTGCTAGCCTTCACAAGGATCAAAGGTAGAGCACTAGAGTGTGAAATCC
TTACCTGTCACTAAGCTGACCCTAGGCAGGACTGCTTTATCTTTACTGTA
AACATTTACCTGGTTCCTGTAAATCCTTTTGAAATCATTCCTTTGTTTTG
TGTCAGGCAACTTCAATGTACTTTGCCTGCTGTGACTCCCGGACCCCTTG
TATTTTCTGTACTATATAACACTGGTGTCCACTTTGTGAGAATACATTCA
GATTCTACACAATCTCGCATGTTGGTATGTCTGTCACCCACCAACACCTT
GCCCACCTGTCCCAGAGACTCGTTCCATGCAGACAAAGGCACCCAGAGGG
TCTGCGGCACTCTGGGTCCTTCTAGTGCCGGAGCTCCTGAATAGCCCACA
CATTTCCTTTTCCTTCTACTGCAATCTACCCCTTAGAAATCCATGAGCTC
TCCCTCATTCCCTGTATTTACTAATTCCCATGTATTTATTCTAATAGCCC
ATTTTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGAGAAGAAAAATAAATCTACCATC
TGAACCTGCTCTACCATTCCTTGACACAGGCTCAAAGGACTCGGCATCTC
ACTGCAGATACACTTTGCTCAGCCATCCTCACACTGTTCTCTTCAAAATG
GGTAGGAAATGGGACTCTCTTAATGTCCTTAAATTGATAAATTCAGAAAA
CAATTGTGAGATGTTCTCTCTAAGGTATCTAGCTCCAAATTTTCTGATAT
AAATGTTGACCCTTACAAATCAAGAAAGATGGAGGAAGCCATTTGGGAGT
AGAAAAGAAGGCTATGCATGACCTGATTGGGGAAATGGGAAAAGGGAAAG
GAGGTTACTCTAAATATAAATAGGGAAAATTGGTTCGAAAAATGGAAGGG
GCTGTATTGACAGTAAATTATTTTGAAAGTATCATGAACTATTATACTAT
AAACTATCTACCTAAAAAATACATATACTATACATATATAAATTCATCCA
TAAATATACAAGTATAGTTAAATGAAAAGGTCACAAACATTAATAAGCAA
AGTGTCATTAATATATACCAAAATATGTTATTAAACTCACATAAGTAAAC
TCCACCACTCACTGAAGGACTTTTCTTTACCTTCACGA

Query= MSMg01no110_d13.g1 MSMg01no110_d13.g1 CHROMAT_FILE:
MSMg01no110_d13.g1 PHD_FILE: MSMg01no110_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:44 2005
         (489 letters)



>mm_chr5_152313949_152314837
          Length = 889

 Score =  859 bits (444), Expect = 0.0
 Identities = 462/468 (98%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagaag-aaaaataaatctaccatctgaacctgctctaccattccttgacacaggct 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tcagagaagtaaaaataaatctaccatctgaacctgctctaccattccttgacacaggct 800

                                                                       
Query: 60  caaaggactcggcatctcactgcagatacactttgctcagccatcctcacactgttctct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 caaaggactcggcatctcactgcagatacactttgctcagccatcctcacactgttctct 740

                                                                       
Query: 120 tcaaaatgggtaggaaatgggactctcttaatgtccttaaattgataaattcagaaaaca 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcaaaatgggtagaaaatgggactctcttaatgtccttaaattgataaattcagaaaaca 680

                                                                       
Query: 180 attgtgagatgttctctctaaggtatctagctccaaattttctgatataaatgttgaccc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attgtgagatgttctctctaaggtatctagctccaaattttctgatataaatgttgaccc 620

                                                                       
Query: 240 ttacaaatcaagaaagatggaggaagccatttgggagtagaaaagaaggctatgcatgac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttacaaatcaagaaagatggaggaagccatttgggagtagaaaagaaggctatgcatgac 560

                                                                       
Query: 300 ctgattggggaaatgggaaaagggaaaggaggttactctaaatataaatagggaaaattg 359
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 559 ctgattggggaaatgggaaaagggaaaggaggttactataaatataaataggggaaattg 500

                                                                       
Query: 360 gttcgaaaaatggaaggggctgtattgacagtaaattattttgaaagtatcatgaactat 419
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 gttcgaaaaatggaaggggctgtattgacagtagattattttgaaagtatcatgaactat 440

                                                           
Query: 420 tatactataaactatctacctaaaaaatacatatactatacatatata 467
           |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 439 tatactataaactatctacctaaaaaatacatatactatatatatata 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)