BAC Information

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BAC

Clone NameMSMg01-110F01
Chromosome5 (Build37)
Map Location 117,040,813 - 117,129,923
singlet/doubletdoublet
Overlap gene1500001A10Rik, LOC433943, Gm1684
Upstream geneGcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110F01.T7 (MSMg01no110_f01.b1)MSMg01-110F01.TJ (MSMg01no110_f01.g1)
ACCAG323272AG323273
length728714
length of high quality
(start - end)
293 (82 - 374)415 (72 - 486)
definitionCHROMAT_FILE: MSMg01no110_f01.b1 PHD_FILE: MSMg01no110_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:52 2005CHROMAT_FILE: MSMg01no110_f01.g1 PHD_FILE: MSMg01no110_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,040,813 - 117,041,103)(117,129,509 - 117,129,923)
sequence
CCTCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAACACGATCCCCAGCTTAGCTAAGACACGGAGGAG
GGTGCTGCTTGGAGCGAGCGTATCTGAGGGAATAGCATATGGGCTTTTGT
TGAAATGTTCAGAGACCCGCTAGTTTCTGGGCCAAGGGTTAGAATGCTTG
TATTGAACACCGGCTGAGCTGAGTTCATGTCTTGTACAGCATCCCCTGAC
ACCTCAAATCCACCACTGCTTTGCTCCCCTGACCTATGCACTTGGCGATA
GCTCGAAAAGTTTTCAGTCAAGTACGTACCCCGAGCCACACCGCCCACCC
TAAGAAAGCAAGGGGGTTTGCATATGAGGTGCGCAGCCTGTAGGAGTGTT
GTTCCCCGTCAAAAAATTCCTGTCCCTTTTCAACAGCCTCTCCCTTACAC
AAGCGATAATTTCTCATGTTCCGGCGTGAGATACCGGGCACGACGGGCTT
AGTCCAGACACCCTGTTCCAGTTGCCTGTCGCCATCCGTCAAGATTCTGG
GGCTCAGGCTATATAAGGTGGGACCTCCCAGTGTCCCTAACTCATGAACG
ACGTCTTTACCTTGTTCTCCGGCTGTCGGCCTGTGATACTGCCTACGATG
TAGCTCTCGGGACGCGGAGTGCTCCCTGTTTTGAAGGTTCCTCTCCCGAA
TTCCTTTATTCGCTGCCCCTTCCCCCTG
ATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTTTGGGAAGCGGTGGGAATTAAACAC
AGGGACTCTGTGCACACTAGATGATACCCTGTCACTGAGCCACATCCCTA
GTCCAAGAAGGCGTGACTCTTGACAACACGTCTGGGACTTCTTTTATAAC
ATAGACTCCCCTCTGGTCCTTTACCACCTATGAATGTGGCAGAGCCCTAC
AGGCCCTGCCTCTGGGTAACTCCTCACCTGGATCACCTGAGATGCATTGG
TCTTCCTGATGGATTGGGTTTAGGACATCAAAGATCTGAATTTCTGAGAT
GAAATCAGCGTAGCGGCAAGTCGTGTACCGCTTACCTTATTTTTCAGCAA
TACTCAGTGCCTTTTGTAAAATTTCAACTACATCTGGAGTATTTAGAAAG
TCATTTTCTAAGGCAGCGTATCCCTTTATGAATACTTCAGGGAGGGACTC
TAAAAGATGATCGCTTTCAAAGGAGACTTTCAGGGTGGAAAAAAAATCAC
ACGGTATACTGTACTCCCTTGTAAAATGTTCTGGATGGCCAACCGGGTTC
TGTGAAGCGTCCTATATGATAATTCCCAGTTTTAGACTTAAGTCAAGAGT
CAGGAGAAGTTGCCTAAATCAGGGTATCAGAGAAATGCTCTTCTATGGCG
TTCGCTTTGTCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_f01.b1 MSMg01no110_f01.b1 CHROMAT_FILE:
MSMg01no110_f01.b1 PHD_FILE: MSMg01no110_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:52 2005
         (293 letters)



>mm_chr5_117040611_117041303
          Length = 693

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gctaagacacggaggagggtgctgcttggagcgagcgtatctgagggaatagcatatggg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gctaagacacggaggagggtgctgcttggagcgagcgtatctgagggaatagcatatggg 262

                                                                       
Query: 63  cttttgttgaaatgttcagagacccgctagtttctgggccaagggttagaatgcttgtat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttttgttgaaatgttcagagacccgctagtttctgggccaagggttagaatgcttgtat 322

                                                                       
Query: 123 tgaacaccggctgagctgagttcatgtcttgtacagcatcccctgacacctcaaatccac 182
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaacactggctgagctgagttcatgtcttgtacagcatcccctgacacctcaaatccac 382

                                                                       
Query: 183 cactgctttgctcccctgacctatgcacttggcgatagctcgaaaagttttcagtcaagt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cactgctttgctcccctgacctatgcacttggcgatagctcgaaaagttttcagtcaagt 442

                                                              
Query: 243 acgtaccccgagccacaccgcccaccctaagaaagcaagggggtttgcata 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acgtaccccgagccacaccgcccaccctaagaaagcaagggggtttgcata 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no110_f01.g1 MSMg01no110_f01.g1 CHROMAT_FILE:
MSMg01no110_f01.g1 PHD_FILE: MSMg01no110_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:52 2005
         (415 letters)



>mm_chr5_117129226_117130040
          Length = 815

 Score =  756 bits (391), Expect = 0.0
 Identities = 409/415 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtttgggaagcggtgggaattaaacacagggactctgtgcacactagatgataccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttgtttgggaagcggtgggaattaaacacagggactctgtgcacactagatgataccctg 639

                                                                       
Query: 61  tcactgagccacatccctagtccaagaaggcgtgactcttgacaacacgtctgggacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcactgagccacatccctagtccaagaaggcgtgactcttgacaacacgtctgggacttc 579

                                                                       
Query: 121 ttttataacatagactcccctctggtcctttaccacctatgaatgtggcagagccctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttttataacatagactcccctctggtcctttaccacctatgaatgtggcagagccctaca 519

                                                                       
Query: 181 ggccctgcctctgggtaactcctcacctggatcacctgagatgcattggtcttcctgatg 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 518 ggccctgcctctgggtaactcctcacctggatcacctgaaatgcattggtcttcctgatg 459

                                                                       
Query: 241 gattgggtttaggacatcaaagatctgaatttctgagatgaaatcagcgtagcggcaagt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 458 gattggctttaggacatcaaagatctgaatttctgagatgaaatcagcgtaacggcaagt 399

                                                                       
Query: 301 cgtgtaccgcttaccttatttttcagcaatactcagtgccttttgtaaaatttcaactac 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 398 cgtgtaccgcttaccttatttttcaacaatactcagtgccttttgtaaaatttcaactac 339

                                                                  
Query: 361 atctggagtatttagaaagtcattttctaaggcagcgtatccctttatgaatact 415
           ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 338 atctggagtatttagaaagccattttctaaggcagcgtaaccctttatgaatact 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)