Query= MSMg01no110_f04.b1 MSMg01no110_f04.b1 CHROMAT_FILE:
MSMg01no110_f04.b1 PHD_FILE: MSMg01no110_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:52 2005
(660 letters)
>mm_chr5_107005905_107006964
Length = 1060
Score = 1261 bits (652), Expect = 0.0
Identities = 655/656 (99%)
Strand = Plus / Plus
Query: 5 gaattccaggccagcctgggatgacatattttctgtgttggggtgggggccaagaatgaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggccagcctgggatgacatattttctgtgttggggtgggggccaagaatgaa 264
Query: 65 caaacaactaaacagctacttgcaaaagaaagcttcagtggaaaagtctgggatatttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacaactaaacagctacttgcaaaagaaagcttcagtggaaaagtctgggatatttcc 324
Query: 125 tgggaatgtctcctctcctttctttcccagttctaggatttcttcttcagagttatcacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggaatgtctcctctcctttctttcccagttctaggatttcttcttcagagttatcacc 384
Query: 185 tgctatacgcccacagcaccttagccaaggtcagtaacagctactatgctggggagagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctatacgcccacagcaccttagccaaggtcagtaacagctactatgctggggagagga 444
Query: 245 agagcctataggacgcaaagcagagcattctgggcaggagccacagtggaagacagcatg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 agagcctataggacgcaaagcagagcattctgggcaggagccacagtggaaggcagcatg 504
Query: 305 ggccagaggcccttgtcccagatacccagctctgagaatgagactcggcttcctgatgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggccagaggcccttgtcccagatacccagctctgagaatgagactcggcttcctgatgag 564
Query: 365 cactaaattaccaccattgctaaactctcccttaatagacttgtaaagatctgctcagta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactaaattaccaccattgctaaactctcccttaatagacttgtaaagatctgctcagta 624
Query: 425 ccttcccccttcatgtagaatttgtaatcaagagcccaattttgtcatttggaaatacta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttcccccttcatgtagaatttgtaatcaagagcccaattttgtcatttggaaatacta 684
Query: 485 attatctaatcacggcatgccgcataacgtacttgtctgcccaattagctaggacaatta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attatctaatcacggcatgccgcataacgtacttgtctgcccaattagctaggacaatta 744
Query: 545 ttaaaattcagaggcctaattatgtctcaatttaatgctggcaaacttgcatacagagca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaaaattcagaggcctaattatgtctcaatttaatgctggcaaacttgcatacagagca 804
Query: 605 gtaattaaaatcctctccttccccctgcctttagggcacaggatgattaggccctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtaattaaaatcctctccttccccctgcctttagggcacaggatgattaggccctg 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_f04.g1 MSMg01no110_f04.g1 CHROMAT_FILE:
MSMg01no110_f04.g1 PHD_FILE: MSMg01no110_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:52 2005
(442 letters)
>mm_chr5_107113638_107114482
Length = 845
Score = 772 bits (399), Expect = 0.0
Identities = 419/427 (98%), Gaps = 4/427 (0%)
Strand = Plus / Minus
Query: 20 tagggagaatatacttggggaggtggtgaagctgcagggctaggcagagcagagcagagg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tagggagaatatacttggggaggtggtgaagctgcagggctaggcagagcagagcagagg 786
Query: 80 aggcagaggcactaagagggaggatgggtggtaggtatgcttc-gagaccagttttccag 138
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 785 aggcagaggcactaagagagaggatgggtggtaggtatgcttctgagaccagttttccag 726
Query: 139 atgctgccttaaactcaccatgtagatgaagtcaactttacatgcacagatatgtacttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 atgctgccttaaactcaccatgtagatgaagtcaactttacatgcacagatatgtacttg 666
Query: 199 cctctacttcccaaatgctgtgtgtcaccacatccagcagaagatggattttagaaaaca 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cctctacttcccaaatgctgtgtgtcaccacatccagcagaagatggattttagaaaaca 606
Query: 259 a---aacaacaacaacaaaacccaattgataatatgaactggtgaggctcctaatcatgt 315
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 605 aaacaacaacaacaacaaaacccaattgataatatgaactggtgaggctcctaatcaagt 546
Query: 316 agtacagagctaaattaaaactgagccacttggtgctggagaagtggcttggtgagtaac 375
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 545 agtacagagctaaattaaaactgagccacatggtgctggagaagtggcttggtgagtaac 486
Query: 376 acaagggtgaggacttgaatttgataaatgctgagtacagatttgtgcatttgtagtttc 435
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acaagggtgaagacttgaatttgataaatgctgagtacagatttgtgcatttgtagtttc 426
Query: 436 aagttcc 442
|||||||
Sbjct: 425 aagttcc 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 845
Length adjustment: 10
Effective length of query: 432
Effective length of database: 835
Effective search space: 360720
Effective search space used: 360720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
