Query= MSMg01no112_b20.b1 MSMg01no112_b20.b1 CHROMAT_FILE:
MSMg01no112_b20.b1 PHD_FILE: MSMg01no112_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:10 2005
(477 letters)
>mm_chr5_79495907_79496783
Length = 877
Score = 830 bits (429), Expect = 0.0
Identities = 441/445 (99%)
Strand = Plus / Minus
Query: 33 tatctctgattttactagtttagtgcacacaaatacttcccaatgccacttttcaaaaat 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tatctctgattttactagtttagtgcacacaaatacttcccaatgccacttttcaaaaat 818
Query: 93 aaccctatccaagtacaaatgttgaatatgcaatgcaacctggaagcattcctcaataga 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aaccctatccaagtacaaatgttgaatatgcaatgcaacctggaagcattcctcaataga 758
Query: 153 ttgcccttctgtattgatttaactgtactggtaagtttgttccttgagtgagataattct 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttgcccttctgtattgatttaactgtactggtaagtttgttccttgagtgagataattct 698
Query: 213 gagatacctactttacattgactctcagagttcccctgtgatataaagttgtatttatat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gagatacctactttacattgactctcagagttcccctgtgatataaagttgtatttatat 638
Query: 273 agactcaagtgcacaataactcactgtattaagagtgtttcttttcttatgtttcttcct 332
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 637 agactcaagtgcacaataactcactgtgttaggagtgtttcttttcttatgtttcttcct 578
Query: 333 tcctaaaatactaccatcttggtaccagctttcaagtaggttttttttctccctcttcaa 392
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 577 tcctaaaatactaccatcttggtaccagctttcaagtgggttttttttctccctcttcaa 518
Query: 393 atattagtgttttatattaagtgtgcagaaactccaaacttttggtctgatcatacaaat 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 517 atattagtgttttatattaagtgtgcagaaactccaaacttttggtctgatcatagaaat 458
Query: 453 ttaaatatttatgaaaataattaaa 477
|||||||||||||||||||||||||
Sbjct: 457 ttaaatatttatgaaaataattaaa 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_b20.g1 MSMg01no112_b20.g1 CHROMAT_FILE:
MSMg01no112_b20.g1 PHD_FILE: MSMg01no112_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:10 2005
(629 letters)
>mm_chr5_79349736_79350764
Length = 1029
Score = 1193 bits (617), Expect = 0.0
Identities = 626/629 (99%), Gaps = 1/629 (0%)
Strand = Plus / Plus
Query: 1 tctgtttagttccataattcatttttttcttagttggattattttgttaactgatctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctgtttagttccataattcatttttttcttagttggattattttgttaactgatctcta 261
Query: 61 atttcttgagttctttatatgttttgaatattagttcactatgagatgtatgcttggtga 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 262 atttcttgagttctttatatgttttgaatattagttcactatgagatgcatgcttggtga 321
Query: 121 agatcttttcccattttgtaggccaccattttgtcctcttgttggtgtcctttgtcttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatcttttcccattttgtaggccaccattttgtcctcttgttggtgtcctttgtcttgc 381
Query: 181 agaaaacttctagttttatgaggtgattatttattaattactgagcttagtgtctgtgct 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 agaaaacttctagttttatgaggtgat-atttattaattactgagcttagtgtctgtgct 440
Query: 241 attagtgtccagttaacaaagttttcttctggcaagcatgtttaagatagttttccactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attagtgtccagttaacaaagttttcttctggcaagcatgtttaagatagttttccactg 500
Query: 301 ccttcgacttcctgggtggcttttgtttatgctgttttatcaaaaccatagaagccccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttcgacttcctgggtggcttttgtttatgctgttttatcaaaaccatagaagccccac 560
Query: 361 ctaaaacagtcctaaattgaaaccttaaacaatgataccacagataatagggtttttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaaacagtcctaaattgaaaccttaaacaatgataccacagataatagggtttttttt 620
Query: 421 aatgtcataaccaatctcctacttataataataaaactctaatctttactactgataatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgtcataaccaatctcctacttataataataaaactctaatctttactactgataatt 680
Query: 481 atatgaataggaatattttatgagcttttttaattttcatgttctttttaaaaatcaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatgaataggaatattttatgagcttttttaattttcatgttctttttaaaaatcaaca 740
Query: 541 catgaaatattagacaccactttgacatttttttaaccattctttctctcaaattcctcc 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 catgaaatattagacaccactttgacatttttttaatcattctttctctcaaattcctcc 800
Query: 601 tcttctgttaacctaattttcctgttgaa 629
|||||||||||||||||||||||||||||
Sbjct: 801 tcttctgttaacctaattttcctgttgaa 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
