Query= MSMg01no112_f23.b1 MSMg01no112_f23.b1 CHROMAT_FILE:
MSMg01no112_f23.b1 PHD_FILE: MSMg01no112_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:30 2005
(572 letters)
>mm_chr5_90023461_90024432
Length = 972
Score = 948 bits (490), Expect = 0.0
Identities = 530/548 (96%), Gaps = 9/548 (1%)
Strand = Plus / Minus
Query: 1 aatagctggccagcagatgagcctgcattttccacttctccttccacacagagaccctga 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 688 aatagctggccagcagatgagcctgcattttccacttctctttccacacagagaccctga 629
Query: 61 tggtatgagtgctcactatccattctgggataacgtgctaaccaatcacagtcatggcct 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 628 tggtatgagtgctcactatccattctgggataatgtgctaaccaatcacagtcatggcct 569
Query: 121 tctaccatacaagtggttccccacatacaataaagtagatactgtttcctaacactgtct 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tctaccatacaagtggttccctacatacaataaagtagatactgtttcctaacactgtct 509
Query: 181 ccagagtggtttatctctgctccctttaccaacccatagacctcgttgtcttgtccaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccagagtggtttatctctgctccctttaccaacccatagacctcgttgtcttgtccaggg 449
Query: 241 atgctcatgttactatggcagaacatgaatttgcattgtcttgttttagaagtgttttga 300
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgctcaggtaactatggcagaacatgaatttgcattgtcttgttttagaagtgttttga 389
Query: 301 agatgccttaagtatgtgtggaaattgtgttttatgaggtggaggaattttcaaaaatat 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agatgccttaagtatgtgtgaaaattgtgttttatgaggtggaggaattttcaaaaatat 329
Query: 361 agtattaggaaagaggtttgttttgttgcatagcaatgacatatgaggcaattgtacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtattaggaaagaggtttgttttgttgcatagcaatgacatatgaggcaattgtacaaa 269
Query: 421 tttgcctttcttttcaaaattctatttttcttctttctataacaggccaacaatacttct 480
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 tttgcctttcttttcaaaaatctattttccttctttctataacaggccaacaatacttct 209
Query: 481 gtttactctttggaacctcttatctgactcttgttgcgtgtatgagacaaatcctttttt 540
||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 208 gtttact--------cc-cttatctgactcttgttgtgtgtatgagacaaatcctttttt 158
Query: 541 tttttttt 548
||||||||
Sbjct: 157 tttttttt 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_f23.g1 MSMg01no112_f23.g1 CHROMAT_FILE:
MSMg01no112_f23.g1 PHD_FILE: MSMg01no112_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:31 2005
(109 letters)
>mm_chr5_89832612_89833120
Length = 509
Score = 203 bits (105), Expect = 2e-57
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 1 gaacagtcattggcttggaagtctctttttgttctgttctacccacatcatgcaaataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacagtcattggcttggaagtctctttttgttctgttctacccacatcatgcaaataga 260
Query: 61 aactcaagcaccttctgtaatgagcgtggagaaaccttaaagagaagct 109
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcaagctccttctgtaatgagcgtggagaaaccttaaagagaagct 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space: 50601
Effective search space used: 50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
