BAC Information

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BAC

Clone NameMSMg01-112H04
Chromosome5 (Build37)
Map Location 55,155,213 - 55,155,505
singlet/doubletsinglet
Overlap geneLOC666380
Upstream geneTbc1d19, Stim2, EG666377
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112H04.T7 (MSMg01no112_h04.b1)MSMg01-112H04.TJ (MSMg01no112_h04.g1)
ACCAG324857AG324858
length723777
length of high quality
(start - end)
---295 (76 - 370)
definitionCHROMAT_FILE: MSMg01no112_h04.b1 PHD_FILE: MSMg01no112_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:36 2005CHROMAT_FILE: MSMg01no112_h04.g1 PHD_FILE: MSMg01no112_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCGGAGCCGCGCGGAANCNNCCACTTACTNGACGGCGTGCACGCG
CGATCCCTTTAAAATTTTGGTGCCCTTGTATTTGCCCGTACAATCCAGAA
TTGACACTTATCTTGGTGGATTTTTACCTTGATGAGATGATGTGTCCTTC
TCCTTTCTTTCGATCACTTTGGCTACAATTCTATCTTATTCATTCACAAT
GGCCACTGCTTTCTCCCTTTTTTCTGCCATTTTCTTGCAAACCTTTCCCA
GACTTTTACTCTACCCAATATTCAATAGTTTTTGCNGCGCCATGTCCCTT
ACACGCCGCCCTTTTTCCCCCCCCCCTTCACATCTATTCTGCTCACCTGC
GTCTTCTCACTAGGGACCCTATGCTCGTTGATCCCGAGAGACATTATTGC
CCCTTGATAATCCCCGTCATTCTTTCGCTGCTTGCGCCATCGTCCGCGTG
CGCCTGCGCTCCTCTGCCCCTTTTCCCCCCCTTTCCCTCCCCCCCCTTCC
CTTTCCCTTTCCCTCTTCTTTTCCCCCCCTTTTTTCCCCCCTCCTCTTTT
TTCTTTTCCCCGCCCCCTTCTATTCCCCCTTTTTTTTTCTTCCCCCTCCC
TCTCCCCCTTTTCTTTCTCCCCTCACCTCCCTTTTTTTTTTTCTTTTTCC
CCCTTTTTTCTCCACTTCTCCCCTCGTTCTCCCCCTTCTCCCCTTTTTTT
TTTCTTCCTCCGCTCTCTTTTTN
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCCAAAGACGGAAGAAGTTGT
CTGATGTCCTTGGAGAAGGAATTACAAGCAGTTGTGTGCTGTACATCATG
GGTGCTAAGACATGACTTTGAGGTCTCTAGAAGGACAGGAAGTTCTCTTA
GTCAGAATGACCCTTTCAACATACAGCTTCTATTTTTAAGATATCCTATA
ATAGTATGTAGATATTGGCTTAATTAAAATACTATGTAAACAGATAATAT
AAGCAGTGAAATGGCATGTAATATGTGACTTAATTGACTTGATTTCTGTC
TTTCTGGCTAGTTCTGTATAGGAAAAATATTTTTTCAAACACGTGTGATA
TTTGACTGCACGCATTTACCTTTTGCATCTTGGTGTGCGTGTGTGTACAT
ATATATATATATATGTCGCGTGCGCGCGTTCCCTCTATTCCCCTTTTTTT
TTCCTCTCTCTCTCTTTCTTCCTCCCTCTCCTTTTTTCTCCTTTTTTCCC
CTTTCTTTTTCCCTTTTCTTCCGCGTTTCCCTTTCTTTTCCTTCTTCCGG
TCTTCCCCTTTCCTTCTCTCTTTTTCTCCCTATCTTTTCTTTTTTCCTTC
CCCCCCTTTTTACTTCCTCTTTTTTCTCTTTTTCCCCCCCCCTTCCTTTT
TTTTTTCTCCCCCCCCTCTTTTTTTTTCCCCCCCCCCCTCCTCTTTCTTC
CTTCATATCTCCTTCTTTCTCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_h04.g1 MSMg01no112_h04.g1 CHROMAT_FILE:
MSMg01no112_h04.g1 PHD_FILE: MSMg01no112_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:36 2005
         (295 letters)



>mm_chr5_55155013_55155707
          Length = 695

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcccaaagacggaagaagttgtctgatgtccttggagaaggaattacaagcagttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agttcccaaagacggaagaagttgtctgatgtccttggagaaggaattacaagcagttgt 434

                                                                       
Query: 61  gtgctgtacatcatgggtgctaagacatgactttgaggtctctagaaggacaggaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtgctgtacatcatgggtgctaagacatgactttgaggtctctagaaggacaggaagttc 374

                                                                       
Query: 121 tcttagtcagaatgaccctttcaacatacagcttctatttttaagatatcctataatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcttagtcagaatgaccctttcaacatacagcttctatttttaagatatcctataatagt 314

                                                                       
Query: 181 atgtagatattggcttaattaaaatactatgtaaacagataatataagcagtgaaatggc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 313 atgtagatattggcttaattaaaatactatgtaaacagataatataagcagtgaaatgac 254

                                                                
Query: 241 atgtaatatgtgacttaattgacttgatttctgtctttctggctagttctgta 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgtaatatgtgacttaattgacttgatttctgtctttctggctagttctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)