BAC Information

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BAC

Clone NameMSMg01-113L16
Chromosome5 (Build37)
Map Location 128,013,651 - 128,013,834
singlet/doubletsinglet
Overlap geneTmem132c
Upstream geneLOC100040327
Downstream geneSlc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113L16.T7 (MSMg01no113_l16.b1)MSMg01-113L16.TJ (MSMg01no113_l16.g1)
ACCAG325792AG325793
length700690
length of high quality
(start - end)
183 (70 - 252)---
definitionCHROMAT_FILE: MSMg01no113_l16.b1 PHD_FILE: MSMg01no113_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:15 2005CHROMAT_FILE: MSMg01no113_l16.g1 PHD_FILE: MSMg01no113_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGATTACCTGAGGCTCCCAAGAGAGATTCCCATGTGGTTTG
TATTCACATCAATCTCTCTGTCTATTTCTGGACAATTACACTTTTACCTT
TTTGATTAAGAGAATAGAATCATTTCTGATGCATTAAGAAGTCTTAGGGA
TGCAAGCTCACTAATAATGACAGGGAAGTGACCAGTTGTGGTTGGAGTGC
TCACTCCTGGAGTGTCTGCGGGGAGCACCCCTGAGATTCCCTGGAGAGGA
GATTCTGGGTGTGAAATAATTATGGTGCGTCTTCACAATGGTCACAAGTA
CTATAAAATATCTTGGCGCGACTCTAACTAAGGAAGTGAAAGATCTGTAT
GTTATGAACTTCTACCCCCTGATTAAAGAACTCGAGGAAGATCTCAGAAG
ACGGAAAGATCTCCCATGCTCTTGGATTGGCTGGATTAATATAGTAAAAA
TGGCTATTCTGCCCAAAGCAATCTACATATTCAATGCCATCCCCATCAAA
ATTCTAACTCTAACGCCTCACTGCAGTTAGAAGGGGCAATTTGTATTTTC
ACCTGGAATAACATACAACCTAGCATAGCTCACACTACCCTCATTTATTA
TATAACTTATGGTGGTATCACCGGGTCATGATCTCATGATGTACTTTCGA

ATGCAGCGGGAGGCCGGGNGGGGCCCTGTCTGCACCGCAGGNGAANNANA
GAATTTCGGCAGGCGGGGGNGGAACNCGAGAAAGCAAGCGAGGCCCAGAC
CNNCAGACCCCAGCNAAGAACGAGAACGACGGAGAGAGACCACCCGGACG
CAGAAGACAGCGCAGAAGCAGCGCCAGAAACGGGGAGAAACCGGAGAACA
ACCCCGAAAGGCAAAGACCCAACAAGGGGACAACAAAACAATTTGAACAA
ACGAGAGGCGCACACACGAGGCCAAGCGCACGCACGCGCACGCGAGAACG
CACTTTTTTTTTTTTTAACCGACAAAGNCACAAGACCCCCAANAGCATTA
TCGCCCCCCCTACTTCCTAGGAGAATCTCCCCGAATCCAGACCACACCCT
TTCACCACCCCGGTAGAGCATCTGCCCCAGGTGCCGTCCCCGCTTCTTAT
GGACCCGCTGGGGACATGCCTGCAACGAACTCACCGTGATGGGACCGTAC
CCTGCCGGGCTTTGATCCACGAATGGCTCACCAGGTAGCCACGCCCGGGC
GGTTACCTCTCTATCTCGATCCGCCTGACCTTGTGCGCGCAGCTAATCGC
TTTGCCTCGTACCTCTGAGGGTTTGTCCACAACGCTGTGTTTTTTTTTTT
CCTGCCCTTAACGGGGTGCAAGGATTTCCGCACCAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_l16.b1 MSMg01no113_l16.b1 CHROMAT_FILE:
MSMg01no113_l16.b1 PHD_FILE: MSMg01no113_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:15 2005
         (183 letters)



>mm_chr5_128013451_128014034
          Length = 584

 Score =  333 bits (172), Expect = 5e-96
 Identities = 181/184 (98%), Gaps = 1/184 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctcccaagagagattcccatgtggtttgtattcacatcaatctctctgtctatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggctcccaagagagattcccatgtggtttgtattcacatcaatctctctgtctatttct 325

                                                                       
Query: 61  ggac-aattacacttttacctttttgattaagagaatagaatcatttctgatgcattaag 119
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 ggacaaattacacttttacctttttgattaagagaatagaataatttctgatgcattaag 265

                                                                       
Query: 120 aagtcttagggatgcaagctcactaataatgacagggaagtgaccagttgtggttggagt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 aagtcttagggatgcaagctcactaataatgacagggaagtgaccagttgtggctggagt 205

               
Query: 180 gctc 183
           ||||
Sbjct: 204 gctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 584
Length adjustment: 8
Effective length of query: 175
Effective length of database: 576
Effective search space:   100800
Effective search space used:   100800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)