BAC Information

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BAC

Clone NameMSMg01-113P18
Chromosome5 (Build37)
Map Location 113,378,520 - 113,378,757
singlet/doubletsinglet
Overlap geneAdrbk2
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b
Downstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113P18.T7 (MSMg01no113_p18.b1)MSMg01-113P18.TJ (MSMg01no113_p18.g1)
ACCAG325978AG325979
length692699
length of high quality
(start - end)
221 (75 - 295)238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no113_p18.b1 PHD_FILE: MSMg01no113_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:34 2005CHROMAT_FILE: MSMg01no113_p18.g1 PHD_FILE: MSMg01no113_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCTAAATTTGCGGCGCTAATAAACTCTCTATTTCCGCACCGGCGCGG
AATTATCTCCTTTCCCAAAAAAGCGATTATTATTTTACTATTTGAGGCAA
AGACCGTCTCATGGGACTCACCTTTGTCTTAAACTTGCTAAGTAGTGGAC
GACAACCTCAAATCCTTGATCCTCTTGTTTCTACCTCCCAGGTCTGAGGA
GCAGGCATGAGCTCCTACCCCTGGCTCGGCAAAGTAATTTGAAACTGACT
GTTTGAGAGCTAAGGAGTACCCTGGGAATCTTTGACATTTGCCTTGGGTG
TGAGGGTAGAGCGATTTACATAGTTTGAGCGGACCAACGAGTGGAGACGC
CCGAAGATAAGTCAAGGCCCCAAATGGTCACAGTGAACACCCGGACAGGT
GGAGAGTTGATGTAGCTAACAATGAGCTGTGCTCTCAAGAAAGAAGGAAG
AGAGGGGCCTGATGGTGCAAGCCTGTCACCCCGGCTGGCTGAGGAAGGAT
GATCACACGTTCAAGGTCACCCTGGACCATATGGCAAGATACTGTCTCAT
AGTGAAGCCGACGCTTCGTGGCAGAGAACTTGCCTTGTCTTCCCGGGACA
AGATAATGCTATGTTCAATCTACAGTACTGCGACATAAATAGGGTGGGTG
ATCCAGTATCTTCGGGAGGCAGATGCCAAAGAACCAGGGTGG
AATGCAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGGACTCTAGAGCGGGTATAACATCGAG
GGGCTGGGGTGATTGCTGGTTTCCCTGCTGCTGCTGGTTTCTGGATTCTT
GTTTTGCTGGCTTGCTGGTTGGAGATATCCTGACAACTGAGATTGGACTT
GCCTCTAGGAATTTAACACCCCTGGTCAGCAGCAAGTGGTCTAAAGAGAT
CTATGCCCCCCTCTCCCCTCTTTCTTTCCCTCCTACCTAGTGTTGGGGGG
TTGGAAGGGACTGGATGGATATGGATCGGTACATATGAGAACCCGATAAA
GCCAAAAAGTACACCCGAAAAGTTAACACCAGGGAAACTTCAACGCTTCT
TTGGACTTTAATACTTCACACTGTCAAGAGATACCATATGGTATGGTAAC
CCTCATTGTATGTTACCTCGTATCGCTGCTGAGGCTCTTCACCGTCTAGG
ACGTGCGAACAGTCTGAGCTGATGCTGTGCACATTCCTGCACAGAATCCT
GCTGAATCAGGATCTGAAAATCAAACACGTACGTTTGCCCTTTGCCTGAC
TTCTTGAACGTTCCCCAAGGTTTGAGACCCTAGCTCCCTGTCCGGAATAT
TGTACCACCGAGCCCCTCACAAGGATGCTGATTCTGCGTGAGAATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_p18.g1 MSMg01no113_p18.g1 CHROMAT_FILE:
MSMg01no113_p18.g1 PHD_FILE: MSMg01no113_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:34 2005
         (238 letters)



>mm_chr5_113378456_113379093
          Length = 638

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggactctagagcgggtataacatcgaggggctggggtgattgctggtttccctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tggggactctagagcgggtataacatcgaggggctggggtgattgctggtttccctgctg 243

                                                                       
Query: 61  ctgctggtttctggattcttgttttgctggcttgctggttggagatatcctgacaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctgctggtttctggattcttgttttgctggcttgctggttggagatatcctgacaactga 183

                                                                       
Query: 121 gattggacttgcctctaggaatttaacacccctggtcagcagcaagtggtctaaagagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gattggacttgcctctaggaatttaacacccctggtcagcagcaagtggtctaaagagat 123

                                                                     
Query: 181 ctatgcccccctctcccctctttctttccctcctacctagtgttggggggttggaagg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctatgcccccctctcccctctttctttccctcctacctagtgttggggggttggaagg 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)