BAC Information

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BAC

Clone NameMSMg01-114L04
Chromosome5 (Build37)
Map Location 137,267,271 - 137,267,704
singlet/doubletsinglet
Overlap geneEmid2
Upstream gene2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl
Downstream geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114L04.T7 (MSMg01no114_l04.b1)MSMg01-114L04.TJ (MSMg01no114_l04.g1)
ACCAG326515AG326516
length699729
length of high quality
(start - end)
439 (49 - 487)588 (76 - 663)
definitionCHROMAT_FILE: MSMg01no114_l04.b1 PHD_FILE: MSMg01no114_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:27 2005CHROMAT_FILE: MSMg01no114_l04.g1 PHD_FILE: MSMg01no114_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGACCCTCCTGGATACGCCTCACATGTGCTGGGATTACGGA
CATGTGTCTATATGTGCCAGTATGTGGTGCTGGGGATGAAATCTAGGCTA
GACAAGCCCTCTCCAAATTGAGCTACAGCCACAACTCAGAGCTTAGCTTC
TCAATGTGTGTGGGGTGAAGGGACTATGGAGCACACAGGAAGGATGCTGG
ACATTGGGAGGGCCAGGATGCAGGGGCACAAATCTTAGTGTGTTGTGACC
ATTGTCTGTCTAACTGAGGCTCTTCAGAGGTCTGGTGCAAATTCTACAGT
ACAGATCCAGAGTCAGCCAGAACACCTTCCCATCCTACCACAGCGGGACT
TGGAATCACTGTCCATCTCCTCACTTAATATCTTATTTTTTGTGTGTGTG
CATGTGTGTGCTTGTGTGTGTGTGCGCGCGCACGTGGCACGTACACAGAA
GCTAGAGGACAACCTAGGCTGTCATCTTTTTCAGACACTGTAATTGTTTA
GAGACCGGATCTCATACTGAACCAAAACTCACTAAGTAGACTACGCTTCC
CGGTCAGTAAGTCCAGGGGACCTGACTGTCTCTGTCTCCTCAGTGTTCCA
ATTACTACCACATTCTGCCATGCCTGTGGTGTTAGCGTATATGCACGTG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCCCCAGCACTCAGATGATTAAA
AAAAAAAAAAAGAGAACTGATTCCCAAAAGCTTTTCTCTGACCTCCACAG
GTGCTCACCCATACTCATACATACAAAATAAGACTTTGAAGCAAAATTAA
AAAAAAATTAAATACAGAACTTGCACAGCTTTTATTATTAATATCACATT
TGATTTCTTGTGTGTGTGTGGCTGTGCACACTGTGGCACTTGTGAGGTAA
GAGGACACCCCCCCCCAGGGGAATCAGTTCCCACAGAGATCCTGGGATCC
GGCTGAGGTTGTCAAGGGCTTTTAGCTGAAAGCACCTTTACCCACTGAGC
CACCTCACGGGCTCCTTGATTCTGTTCCCAAGCAGGCTACTCCAATGGTC
TCTCTGCTGGATGTTGTAAAATCTTGATGTGATGTCTTTTTCTAAGTGTT
TCTGTTGCTTGCTGTTGGTATTCTGTCTGGACTCCACCCCCTCAGTTACC
TGGCAACAGGTAGCCAGGTAGGCCTGGCCCACTATAAAAGGGGCTGCTTG
CCCCCCTCACTCTCTGACTCTTGCCTCTCTCTCTTGCCTCTTGCTCCCCT
GCTACTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTCTCTTCCCTTCTCTTCTCTTCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_l04.b1 MSMg01no114_l04.b1 CHROMAT_FILE:
MSMg01no114_l04.b1 PHD_FILE: MSMg01no114_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:27 2005
         (439 letters)



>mm_chr5_137267067_137267905
          Length = 839

 Score =  756 bits (391), Expect = 0.0
 Identities = 424/435 (97%), Gaps = 1/435 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgaccctcctggatacgcctcacatgtgctgggattacggacatgtgtctata 64
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaccctcttggatacacctcacatgtgctgggattacggacatgtgtctata 264

                                                                       
Query: 65  tgtgccagtatgtggtgctggggatgaaatctaggctagacaagccctctccaaattgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgccagtatgtggtgctggggatgaaatctaggctagacaagccctctccaaattgag 324

                                                                       
Query: 125 ctacagccacaactcagagcttagcttctcaatgtgtgtggggtgaagggactatggagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctacagccacaactcagagcttagcttctcaatgtgtgtggggtgaagggactatggagc 384

                                                                       
Query: 185 acacaggaaggatgctggacattgggagggccaggatgcaggggcacaaatcttagtgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacaggaaggatgctggacattgggagggccaggatgcaggggcacaaatcttagtgtg 444

                                                                       
Query: 245 ttgtgaccattgtctgtctaactgaggctcttcagaggtctggtgcaaattctacagtac 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 ttgtgaccattgtctgtctaactgaggctcttcagaggtctggtacaaattctacagtac 504

                                                                       
Query: 305 agatccagagtcagccagaacaccttcccatcctaccacagcgggacttggaatcactgt 364
           |||||  |||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 505 agatctggagtcagccagaacaccttcccatcctaccaccgtgggacttggaatcactgt 564

                                                                       
Query: 365 ccatctcctcacttaatatcttattttttgtgtgtgtgcatgtgtgtgcttgtgtgtgtg 424
           ||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 565 ccacctcctcacctaatatcttatttttt-tgtgtgtgcatatgtgtgcttgtgtgtgtg 623

                          
Query: 425 tgcgcgcgcacgtgg 439
           |||||||||||||||
Sbjct: 624 tgcgcgcgcacgtgg 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)