BAC Information

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BAC

Clone NameMSMg01-114L12
Chromosome5 (Build37)
Map Location 31,779,068 - 31,779,678
singlet/doubletsinglet
Overlap geneZfp512
Upstream gene1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream gene4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114L12.T7 (MSMg01no114_l12.b1)MSMg01-114L12.TJ (MSMg01no114_l12.g1)
ACCAG326531AG326532
length706708
length of high quality
(start - end)		611 (42 - 652)479 (76 - 554)
definitionCHROMAT_FILE: MSMg01no114_l12.b1 PHD_FILE: MSMg01no114_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:28 2005CHROMAT_FILE: MSMg01no114_l12.g1 PHD_FILE: MSMg01no114_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGATTATGACATTCCCCGTTCCTTTTCTCACAATCACTGCCCAAATTCT
GAGATGATTCTCTTTCTTTGAAACAGGGCACCTTCGTGGCTGGAAAGTAC
AAGTGTCTCCTGTGTGAGAAAGAGTTTGTGTCAGAGAGTGGGGTCAAGTA
TCACATCAACTCTGTTCATGCCGAGGTATGCCCCCCACCTCCCCTAGTGT
GTGCAGTCCTGTGTGCCCCATCTTGAGGCTCTAAGAGTTGACCTTGCCCC
TGGCTTCATGATCTAGGACTGGCAAAGAAATTTGTGCTGAGAACTTGCCA
GAGTTAAAATGCTGTCTGAAATTACATGAGTGTAAATGAAATCTTCTGTG
AAGAAAAATTAGATAAAGCTCACTGTGGCTGGCATGTTTGAGCCCCTATA
ATTCTCTTACCTATGATTTAATGGAACATTTGGGAACCAGGCTGAAGTTA
CATGTTTGATCTTGTTTTACAGCATTTTCTTCTGATAAACATTTAGATGT
TTTAATGTTTGCCAATAACCTGGGGTCTTTAAATTATCATCAGTTCTGTG
TCATTTTAAAAACATGCTTACTCTTTCTTGGGAGCTCTCCCCGAGTTCCC
AGCTATGCTCCAAGAACAGCCCTGTTGCTGGCTGGTGTTTTTCCGAGTGC
CCCCCC

CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGATCATGCTGGCCTCAG
ACTCACAGAGACCTGTCCACCTCTGCCTCCTGAAGGCTGGAACCAAAGGC
TTGTTCCAACATGCACAGCTTCCCATAATAAATTCTCTTCTCTTCTCTTC
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCTCTCTCTCTCTTCTCT
CTTTTAAGTTAACATTTTAAAATTTCTTTCCTTATATATTGCATCCCAAC
CTTAGTTTCCCCTTCCTCTTCTCCACCCAGTTCCTCCCCCCCCCACCAGA
TCCATTCCTCGTCTGCTTCCCTTCAGAAAAGGGCAGGCCATCCAGGGATA
TGAACCAAACACAGCACATCAAGTTACAATAAGACTAGGCACATGCCCTC
ATATTAAAGCCAGACAAGGCAGCTCAGTAGGAGGAAAAGAGTCAGAGACA
GCCCTGCTCCTACTGGATGGATTTGAATATATTCTCTTACTACTTATTTT
TCATTCTAAGTCTCAGAATCAGAGCTTGTTCAAGTTGGCTTCCTTGGGCC
TGGCTATAGCCATACTTAAACATACTTCCCGTGTTTGGCTTTTTTTTTTT
TCGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_l12.b1 MSMg01no114_l12.b1 CHROMAT_FILE:
MSMg01no114_l12.b1 PHD_FILE: MSMg01no114_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:28 2005
         (611 letters)



>mm_chr5_31778864_31779878
          Length = 1015

 Score = 1122 bits (580), Expect = 0.0
 Identities = 602/612 (98%), Gaps = 6/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgattatgacattccccgttccttttctcacaatcactgcccaaattctgagat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgattaagacattccccgttccttttctcacaatcactgcccaaattctgagat 264

                                                                       
Query: 65  gattctcttt-----ctttgaaacagggcaccttcgtggctggaaagtacaagtgtctcc 119
           ||||||||||     |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattctcttttctttctttgaaacagggcaccttcgtggctggaaagtacaagtgtctcc 324

                                                                       
Query: 120 tgtgtgagaaagagtttgtgtcagagagtggggtcaagtatcacatcaactctgttcatg 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtgagaaagagtttgtgtcagagagcggggtcaagtatcacatcaactctgttcatg 384

                                                                       
Query: 180 ccgaggtatgccccccacctcccctagtgtgtgcagtcctgtgtgccccatcttgaggct 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 ccgaggtatgccccccacctcccctagtgtgtgcagtcctgtgt-ccccatcttgaggct 443

                                                                       
Query: 240 ctaagagttgaccttgcccctggcttcatgatctaggactggcaaagaaatttgtgctga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaagagttgaccttgcccctggcttcatgatctaggactggcaaagaaatttgtgctga 503

                                                                       
Query: 300 gaacttgccagagttaaaatgctgtctgaaattacatgagtgtaaatgaaatcttctgtg 359
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaacttgccagagttaaaatgccatctgaaattacatgagtgtaaatgaaatcttctgtg 563

                                                                       
Query: 360 aagaaaaattagataaagctcactgtggctggcatgtttgagcccctataattctcttac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagaaaaattagataaagctcactgtggctggcatgtttgagcccctataattctcttac 623

                                                                       
Query: 420 ctatgatttaatggaacatttgggaaccaggctgaagttacatgtttgatcttgttttac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctatgatttaatggaacatttgggaaccaggctgaagttacatgtttgatcttgttttac 683

                                                                       
Query: 480 agcattttcttctgataaacatttagatgttttaatgtttgccaataacctggggtcttt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcattttcttctgataaacatttagatgttttaatgtttgccaataacctggggtcttt 743

                                                                       
Query: 540 aaattatcatcagttctgtgtcattttaaaaacatgcttactctttcttgggagctctcc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaattatcatcagttctgtgtcattttaaaaacatgcttactctttcttgggagctctcc 803

                       
Query: 600 ccgagttcccag 611
           ||||||||||||
Sbjct: 804 ccgagttcccag 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1015
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1005
Effective search space:   604005
Effective search space used:   604005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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