Query= MSMg01no114_o03.b1 MSMg01no114_o03.b1 CHROMAT_FILE:
MSMg01no114_o03.b1 PHD_FILE: MSMg01no114_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:41 2005
(615 letters)
>mm_chr5_92521564_92522578
Length = 1015
Score = 891 bits (461), Expect = 0.0
Identities = 550/619 (88%), Gaps = 64/619 (10%)
Strand = Plus / Plus
Query: 4 ggaattccttcatcccgccctatggattaagtcagtgtctgcaagaacggctgagccaga 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttcatcaggccctatggattaagtcagtgtctgcaagaacggctgagccaga 263
Query: 64 gtgctcccagagaatcgggtgactgccttggagaagccagggctgaagaaccgatttcca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgctcccagagaatcgggtgactgccttggagaagccagggctgaagaaccgatttcca 323
Query: 124 gtgaaatgcagaagtgtgaattacatgatcagatcagttcatttctctgacaatttagag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgaaatgcagaagtgtgaattacatgatcagatcagttcatttctctgacaatttagag 383
Query: 184 taatgtgaagatcatttgtagtgttgagcatggttcctggtaagacacacacacacacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taatgtgaagatcatttgtagtgttgagcatggttcctggtaagacacacacacacacac 443
Query: 244 acacacgcacacacaccacacacacacacacacacacacacacacacacacacacacaca 303
|||||| |||
Sbjct: 444 acacac---------------------------------------------------aca 452
Query: 304 cacgattctc-atgggaaaaacaaggtaagccagacatggcttgtatcttgtgtctccta 362
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cacgatt-tccatgggaaaaacaaggtaagccagacatggcttgtatcttgtgtctccta 511
Query: 363 ttcaggaggctgaagcaagaggaccacttgaacccagctcaagggtaccctgggtacaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttcaggaggctgaagcaagaggaccacttgaacccagctcaagggtaccctgggtacaaa 571
Query: 423 gcaggtcttgggatggggagagaaaagatcagaggcttaggagaaagaacacaaggaaag 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gcaggtcttgggatggggagagaaaagatcagaggcttaggagaaagaacacaag----- 626
Query: 483 aaagaaccattgacaagggactccc------gacagtgctgcataaagtcagatggctgg 536
||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||
Sbjct: 627 aaagaaccattgacaaggggcccccaacagtgacagtgctgcatgaagtcagatggctgg 686
Query: 537 tcccgggtctcccagcccccacctgcctcctccttattctctttttgcctcggatacttg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tcccgggtctcccagcccccacctgcctcctccttattctctttttgcctcggatacttg 746
Query: 597 attttgggagcagagcaga 615
|||||||||||||||||||
Sbjct: 747 attttgggagcagagcaga 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_o03.g1 MSMg01no114_o03.g1 CHROMAT_FILE:
MSMg01no114_o03.g1 PHD_FILE: MSMg01no114_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:41 2005
(451 letters)
>mm_chr5_92608388_92609238
Length = 851
Score = 818 bits (423), Expect = 0.0
Identities = 444/451 (98%)
Strand = Plus / Minus
Query: 1 aaatcaagagagcgtgcaggagagatcccaggagaatggcggaaggaagtcccaggacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaatcaagagagcgtgcaggagagatcccaggagaatggcggaaggaagtcccaggacca 439
Query: 61 gaaatgagctacagctcagatggagcaggaggatggagggtgggtttccaagactagagt 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagctgagctacagctcagatggagcaggaggatggagggtgggtttccaagactagagt 379
Query: 121 ggggcgtgctgtgctgagcagagtataggatatacagttataaagagctacacaatgaaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 378 ggggcgtgctgtgctgagcagagtataggatatacagttatacagagctacacaatgaaa 319
Query: 181 aagaaggcagtcatggctcacgtgagagctggacacacactatgtcctctcccactagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 aagaaggcagtcatggctcacgtgagagctggacacacactatgtcctctcccaccagac 259
Query: 241 acagtactgcttggctgagtaggagcagtgctggtgtacacattaatgcataagcctcag 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acagtactgcttggctgagcaggagcagtgctggtgtacacattaatgcataagcctcag 199
Query: 301 ccacgagcagtggcttgcgcctgcagcctcagcactcggaaagctgaggcaggagtacta 360
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 198 ccacgagcagtggcttgtgcctgcagcctcagcactcagaaagctgaggcaggagtacta 139
Query: 361 cctggagttcaaggctagcctgcctcacaaatgttgtatttacatataaatcccattagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cctggagttcaaggctagcctgcctcacaaatgttgtatttacatataaatcccattagt 79
Query: 421 ttaaacatacattccatacaatcatcctagc 451
|||||||||||||||||||||||||||||||
Sbjct: 78 ttaaacatacattccatacaatcatcctagc 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
