Query= MSMg01no115_b18.b1 MSMg01no115_b18.b1 CHROMAT_FILE:
MSMg01no115_b18.b1 PHD_FILE: MSMg01no115_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:58 2005
(463 letters)
>mm_chr5_9027839_9028701
Length = 863
Score = 830 bits (429), Expect = 0.0
Identities = 450/457 (98%)
Strand = Plus / Minus
Query: 5 gaattcagaattgcctcattgtgtccttcttatcactgtaatgcatgccaaagaccaatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaattcagaattgcctcattgtgtccttcttatcactgtaatgcatgccaaagaccaatg 792
Query: 65 cttatgaaatacttatttgcatgacctcttacctacttaatcatacaatagcttctatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 cttatgaaatacttatttgcatgacctcttacctacttaatcatacaatagcttctatgt 732
Query: 125 aacacaaagaaagaaataaaagagaagagggaagtaatggagaaaagaagtattaaaaga 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 731 aacacaaagaaagaaataaaagagaagaaggaagtaatggagaaaagaagtattaaaaga 672
Query: 185 aagaaaaaagtaagtgacccttgtacacactgaagcagagtccaaagtgcttggagtgct 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aagaaaaaaataagtgacccttgtacacactgaagcagagtccaaagtgcttggagtgct 612
Query: 245 aacagaagattgctttgtgacagccaatgctaacatgtgtatcagttttacctactcaca 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 611 aacagaagattgctttgtgacagccaatgctaacatgtgtatcagttttgcctactcaca 552
Query: 305 gctgatggctgccccagttagccaacttcagaagcacgagaagtcaaggagaagtagcaa 364
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 551 gctgatggctgccccagttagccaacttcagaagcacggggagtcaaggagaagtagcaa 492
Query: 365 atgagatatgtcataaagtgccaaaaggaaagtactgtggaaaagctggttgtgcagcca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 491 atgagatatgtcataaagtgccaaaaggaaagtactgtggaaaagctggttgtacagcca 432
Query: 425 ggttgtgtctggtaaagagaaagaaagaagaaaaagg 461
||||||||||||||||| |||||||||||||||||||
Sbjct: 431 ggttgtgtctggtaaagtgaaagaaagaagaaaaagg 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_b18.g1 MSMg01no115_b18.g1 CHROMAT_FILE:
MSMg01no115_b18.g1 PHD_FILE: MSMg01no115_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:58 2005
(503 letters)
>mm_chr5_8839311_8840213
Length = 903
Score = 886 bits (458), Expect = 0.0
Identities = 493/506 (97%), Gaps = 6/506 (1%)
Strand = Plus / Plus
Query: 1 tgttgaaggcagaaggaggatggtgaagaggcttattcttttttttttttc-aaatcaca 59
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 201 tgttgaaggcagaaggaggatggtgaagaggcttattc--ttttttttttcaaaatcaca 258
Query: 60 c--tttttttcctgcaaaattattttgtaaacaatactttctgaaagaaaccactatttt 117
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 259 cattttttttcctgcaaaattattttgtaaacaatactttctgaaagaaaccgctatttt 318
Query: 118 tactctttcagctaaaagttctttttgtgtgggggaggattacttagttttaaaaacttg 177
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 tactctttcagctaaaagttctttttgtgtgggggaggatcacttagttttaaaaacttg 378
Query: 178 tagagaatgaagcctaattaagagtccacatttaaggcttttcctaattgcttcattgtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagagaatgaagcctaattaagagtccacatttaaggcttttcctaattgcttcattgtg 438
Query: 238 cctttaaatgaagagattgtcccatgaagtctgtgctgtaaagcctcactttcatcagca 297
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccttgaaatgaagagattgtcccatgaagtctgtgctgtaaagcctcactttcatcagca 498
Query: 298 gtatgcacactgagaaaacatgacattctcagactcaccgcagccacggcatccttgcct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtatgcacactgagaaaacatgacattctcagactcaccgcagccacggcatccttgcct 558
Query: 358 cagtaagtgatgtgcaggaaatctttatcctttgttgatctgaccatggatcttgttttc 417
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 559 cagaaagtgatgtgcaggaaatctttatc-tttgttgatctgaccatggatcttgttttc 617
Query: 418 tgtcacacattgctgcggtttgtgcagtggcccttctaaccccgaaagctcttctattat 477
||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 618 tgtcacacattgctgtggtttgtacagtggtccttctaaccccgaaagctcttctattat 677
Query: 478 ttgaacagttataattacaaatactt 503
||||||||||||||||||||||||||
Sbjct: 678 ttgaacagttataattacaaatactt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
