BAC Information

Click to search

BAC

Clone NameMSMg01-115D08
Chromosome5 (Build37)
Map Location 50,691,483 - 50,691,848
singlet/doubletsinglet
Overlap geneEG637307
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115D08.T7 (MSMg01no115_d08.b1)MSMg01-115D08.TJ (MSMg01no115_d08.g1)
ACCAG326896AG326897
length721721
length of high quality
(start - end)
370 (36 - 405)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no115_d08.b1 PHD_FILE: MSMg01no115_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:06 2005CHROMAT_FILE: MSMg01no115_d08.g1 PHD_FILE: MSMg01no115_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTT
GGGTGTTTGCTGAGCCATTCTGTGACGAATAACTCCTGGACTTTTCAATA
AAGTGGCAATAAACAAATATGGCTGTTAAGATTGAAAAAAGGAAATTGCA
GTCTAATTTTATTTTAGATGTTCCAGCTGTGACTCCTTTCTAGGAATAAG
AAATGAAACAGAGGCAGGAACAACATAAAACAGCAGTATTTTAAGAAAAT
CTGAAGAAGAGAAGACAAAGTGGCAGACTAATTCGTGATTCATGTTATTA
ATTGATAATTATGGCTCATCATTTGTTATCAAATATTAAAAGAATTTTTG
GAAGAGTTAGCATCATCGTCATCTTCATCTTCATCATCATCCTGTGAAGG
CAATTCACCCCCCCTGTTTCTAACCAGGCTGCTTAGTCATAGCTCAAATG
CTACACCGAAATGCTTGCAAATCCTGTCAACTCATTTTTGATAGTTAGAA
CATCAAACTATGCAAATGAATTTGCTATAGCTGAGCAGTGCTGACGTTTT
AGGATATTTAATGATTTTCCCACCGTTCTATTCTTGATACCTTCACCTAA
GACTCCGGAAGTGCTGAAGACAGCTGCTTTTTCCTTGACTCAGCTCCAGC
CGAGTGGAAGCTGGGCCTAACCCCCACCTTCCCCTTCCCTAAATACCTGG
TCTCGCCCCTCCTCCTAATAN
CCCCTCGATGAAGTGNGAGCCTGGCGGCGCCTGTTCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAG
AGAAGCACGTGAAAAATTTTTCACCATTCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCTGCCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCAAGGACGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTCAGAAATTTGTTACACAGTACTACTGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTACTTATCAGCTAGGT
AACCCAATCAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAGAAACTATGATACCCAAGATATACCATACAATTTGCTAACCGC
ATGAAACTCAAGCCTGAAGACCACCGTGCGTACACTTCGTCCCTTCCCCA
AATTGGTAAGAACATTCGCATGTAACGCCCTACAAACACTTATTTTCGCC
CCTGCCTTTTTTTTTATTTCCCCCCTTCCCACTGCCCTTCCCCTGCTATC
CTTACCTCTCACTATCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_d08.b1 MSMg01no115_d08.b1 CHROMAT_FILE:
MSMg01no115_d08.b1 PHD_FILE: MSMg01no115_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:06 2005
         (370 letters)



>mm_chr5_50691324_50692093
          Length = 770

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttttgggtgtttgctgagccattctgtgacgaataactcctggacttttcaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattccttttgggtgtttgctgagccattctgtgacgaataactcctggacttttcaat 466

                                                                       
Query: 65  aaagtggcaataaacaaatatggctgttaagattgaaaaaaggaaattgcagtctaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaagtggcaataaacaaatatggctgttaagattgaaaaaaggaaattgcagtctaattt 406

                                                                       
Query: 125 tattttagatgttccagctgtgactcctttctaggaataagaaatgaaacagaggcagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tattttagatgttccagctgtgactcctttctaggaataagaaatgaaacagaggcagga 346

                                                                       
Query: 185 acaacataaaacagcagtattttaagaaaatctgaagaagagaagacaaagtggcagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acaacataaaacagcagtattttaagaaaatctgaagaagagaagacaaagtggcagact 286

                                                                       
Query: 245 aattcgtgattcatgttattaattgataattatggctcatcatttgttatcaaatattaa 304
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 285 aattcgtaattcatgttattaattgataattatggttcatcatttgttatcaaatattaa 226

                                                                       
Query: 305 aagaatttttggaagagttagcatcatcgtcatcttcatcttcatcatcatcctgtgaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aagaatttttggaagagttagcatcatcgtcatcttcatcttcatcatcatcctgtgaag 166

                 
Query: 365 gcaatt 370
           ||||||
Sbjct: 165 gcaatt 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)