BAC Information

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BAC

Clone NameMSMg01-115F06
Chromosome5 (Build37)
Map Location 138,670,866 - 138,671,055
singlet/doubletsinglet
Overlap geneBC055004
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454
Downstream gene0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115F06.T7 (MSMg01no115_f06.b1)MSMg01-115F06.TJ (MSMg01no115_f06.g1)
ACCAG326986AG326987
length842731
length of high quality
(start - end)
93 (187 - 279)447 (79 - 525)
definitionCHROMAT_FILE: MSMg01no115_f06.b1 PHD_FILE: MSMg01no115_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:15 2005CHROMAT_FILE: MSMg01no115_f06.g1 PHD_FILE: MSMg01no115_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTCCTCCTCTCCCCCGCCACCCCCTTACCTCCNCCCCTTCCCCATN
CCCTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGTATAGGACAAGTTGGCCTTGCTTCATTTGCCTCTG
TGCTGGGATTAGATGTGAGCAAGCCAATTTGGCTAATTCCTGGAAATTCA
CATTAGGTCATTGTTTCTCAAACTTGTAGGTCGTGACCCCTTTGAAAGTT
GAATGACTCTTTCACAGGGGTTACCTAAGACTATTGGAACACACAGATAT
TTATCTTACTGTTCTTATCAGTAGCAAAAAAACACGGCCATGAAGTAGCG
ACGATAATAATTCTACGGTTGCCGGTCATCATATGAGAAACTGCATTAAC
AGGTCATAGCACGAGGAAGTTTGAGAATTTCCGTCTTAGGCTTTACCCGT
CCTGTATGACTAAGGGGCTCCCCCCCCCCAATTCGTTATCAGCTCACGCC
CAACACAGTGTACTTCTTACGTACCTCCGCCCCACGCTATTGTGTTATTT
CCCTACCCCTCCCAGATCCCTCCCCTATTGCCCTTTCTATATACCCTCCC
CCCCTCCGATTACACGCACCTTATCGTCTCCCGAATTCCTACCCCTTCTT
CTTACTTGTTTTATTCCTCCTCCCCCGCTCTTCCACTACCCTTCCTTACA
CACCCCTCCTTCCCCCCGCGCTTTTTTTCTCCCGTTCTTTTTATCCCCCT
TCCTCGCCCCTCTATCTCCTCACCTCGACCAACACCCTTTCCCACTCCGC
TCCCCCACTCTTCTCCTTCCTTTCCTTCACCTCCTCCCTCCN
NTTTACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTCAGCACCAATGTAACAG
AGCCAGCTGAATCTCAGCACCAATGGCTGAAACTTCTCCTATTACCATTC
CTGTATTTAACAACATGTATGCATGTCAGATGACTGTGCTAATGGGAATT
AGAAGCCAACACAGTGAATCAGCTCCTCTGTTAATGGAAGGACCTGTTAA
TCTTATAATGCTGACGTGTTGTATGCCGGCCTGCGACCTGCTTGAACTGG
GTATACCTGGGGGCCAGGCTGGGGCTGAAAGAGACTTAGACAGTGAGAGA
TTAATGGAGACCAAAACATGATTCTGTTCAAGGCCCACCAGTTTACTAAG
AGAGTGTGCTTATAAAAGGTGAACCCCCCATGCCCTGCCAGTCCATTCTT
GGTGTCTGGAGGCAGCCTGTAGGCGACGTGCAGGATAGGATGTTCCTCTG
GGATATCTCAGGGACTTCTCAGCGGGTAGCAGTGTCTTGGAGAGAGCAGT
GGCAGATGACAGAATAAAACAGACATCTATGTTGGAAGGATGCACCATCG
GTAATCTCCTTCTTTGTGGCAGCAAGTTCAAAGTCTGGATCAGCCTGCTT
CAGGGCTGAGGGAGGCTACAATTCCTCCCTGATTGTATAATAAAAATAGT
CCTAACGAGGCATAAATTTTATTTATGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_f06.g1 MSMg01no115_f06.g1 CHROMAT_FILE:
MSMg01no115_f06.g1 PHD_FILE: MSMg01no115_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:15 2005
         (447 letters)



>mm_chr5_138670666_138671514
          Length = 849

 Score =  257 bits (133), Expect = 9e-73
 Identities = 176/191 (92%), Gaps = 4/191 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctcagcaccaatgtaacagagccagctgaatctcagcaccaatggctgaaacttctc 60
           ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 201 tgcctcagcaccaatgtaacagagccagctggatttctgcaccaatggctgaaacttctc 260

                                                                       
Query: 61  ctattacca--ttcctgtatttaacaacatgtatgcatgtcagatgactgtgctaatggg 118
           |||||||||  ||||| ||||||||| |||| ||| ||||||||||| |||| |||||||
Sbjct: 261 ctattaccatgttcctctatttaacagcatggatgtatgtcagatgattgtgttaatggg 320

                                                                       
Query: 119 aattagaagccaacacagtgaatcagctcctctgttaatggaaggacctgttaa-tctta 177
           ||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | |||
Sbjct: 321 aattagaagccaacacagtgaatcagctcttctgttactggaaggacctgttaaat-tta 379

                      
Query: 178 taatgctgacg 188
           |||||||||||
Sbjct: 380 taatgctgacg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 849
Length adjustment: 10
Effective length of query: 437
Effective length of database: 839
Effective search space:   366643
Effective search space used:   366643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)