BAC Information

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BAC

Clone NameMSMg01-115H24
Chromosome5 (Build37)
Map Location 113,225,556 - 113,225,838
singlet/doubletsinglet
Overlap geneMyo18b
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneAdrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115H24.T7 (MSMg01no115_h24.b1)MSMg01-115H24.TJ (MSMg01no115_h24.g1)
ACCAG327116AG327117
length865714
length of high quality
(start - end)
186 (34 - 219)292 (84 - 375)
definitionCHROMAT_FILE: MSMg01no115_h24.b1 PHD_FILE: MSMg01no115_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:27 2005CHROMAT_FILE: MSMg01no115_h24.g1 PHD_FILE: MSMg01no115_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACC
CAAATTTCCTGTCTGCTTCATCTTATGATACCTGCTAAAAGACTTATGGG
ATGGCCCAGTTGCTGTGCCGGTTTGAATTAGAATGGTCCCCACAGGGTCA
TAGACGTGAATGTTTAGTCCCCAATTGATGGAACTACTTGGAAAGGATTA
GGAGGTGTGGCCTTGTTAGAGTGGTGTGCCCTTGTCATACGAGGCGTGGC
TTTGCTAGAGGCGTATGGCCTTGTCAGAGGGGGTGTGGGCTTGTTATAGG
ACGTGTGATCCCGCTTTCTCTTTCGCCCCCATCCCTACAATCCCTCGCCC
CTTTTTTTTTTTTTTTTTCCCCCTCCCCCCCTATGCCGTCTCCCCCTTTC
CTCTTTCTCCTTTTTCCCCCCCCCCCCTCTTATACAACCACTTCTCTCTT
TTTTTTTTCCCCCCCCTCCCCCCATCTTACTTCCTCCTCGTTTCCACTTC
CCCTTCTCCTTTCTTTCATCCCTTTTCCCTCCGCCTCTCCTTCTCCATCC
CCTAATTTTTCCCCCCCTCTCTTTTTCCTCCTCATTCCGCCCCCCTTCCT
TTATTCCTCCCCGCCCCATCTCCGAATACCCCGTCTTTCTTCCCCCTCTT
CTTCTCTCTCTTTCTTATTTCTCCATCCGCTCCCTTTCTTCTTTCCTCTT
ACCTCTTCCCTTTCTTTCCCTCCTCNTCCCATGCCGCGCCTTTCTTCTTC
CCCCTCTTTTTTTCCCCTCCTCCTTTCCCCCCTAACTCTCTCAAACCGTT
CTCCTATAATCCTGTTAGATTGATACTATCCCACTCCTTTGTCTCTTACC
TCCTCCCTCCCCTCC
GCTTTACCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAGCTTAGCCTCA
AGGGTCCATCCCAGTATCAACTGATGTTGTCCCCAAATGTTCAGCACTTT
CTCAGCACTGCACCTTTGCCTATTCTGCTGCAGCTGCAGCTCAGAGGGGG
TTTCCTCCTCTTCTGTCTTGATATTCTCACCCCAGCTTCAGACCTCAAAC
ACCACGCTCTAGAAAGCCCTGGCTAACAGAGACTGAGGTGGGGATCCCTC
GGCCATTCGCTTCCAGTCTGGCACACACCTTGTATGTCATGCATCTCTTT
ATTCCTTGGTCTCTCCCATTCACTGGAGGAGCCGCAGGGTGGGGGTTTCT
ATTCTTCTACTATGCTCTCAGCATGCCCCACTAATAAACTGAGATATCTT
ACGGAAAGGGTCAAGTGATGATCACAGAGGGGACCCCATATAAATAGTGT
AAGACAGGTGTGGCAAATCCGTTCCCACCCCTTGGGCGATGCTGGTGTAA
CTTTTTACAGTCCCTTCCCTGATGTACTCTCAGAGCCAGACCCAGGTCAG
CTCCTAGCCTTGCCCCGCACTGACCCATTATCCCTTTTTTGCCTCTCTCC
CCGATGATTCGTTAAACTTCCCCATATTCACAAGTCCCAGACCCGCCTCC
CTTTCTTATAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_h24.g1 MSMg01no115_h24.g1 CHROMAT_FILE:
MSMg01no115_h24.g1 PHD_FILE: MSMg01no115_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:28 2005
         (292 letters)



>mm_chr5_113225356_113226038
          Length = 683

 Score =  526 bits (272), Expect = e-154
 Identities = 283/292 (96%), Gaps = 9/292 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagagcttagcctcaagggtccatcccagtatcaactgatgttgtccccaaatgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agaagagcttagcctcaagggtccatcccagtatcaactgatgttgtccccaaatgttca 424

                                                                       
Query: 61  gcactttctcagcactgcacctttgcctattctgctgcagctgcagctcagagggggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcactttctcagcactgcacctttgcctattctgctgcagctgcagctcagagggggttt 364

                                                                       
Query: 121 cctcctcttctgtcttgatattctcaccccagcttcagacctcaaacaccacgctctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cctcctcttctgtcttgatattctcaccccagcttcagacctcaaacaccacgctctaga 304

                                                                       
Query: 181 aagccctggctaacagagactgaggtggggatccctcggccattcgcttccagtctggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagccctggctaacagagactgaggtggggatccctcggccattcgcttccagtctggca 244

                                                               
Query: 241 cacaccttgtatgtcatgcatctctttattccttggtctctcccattcactg 292
           ||||||         |||||||||||||||||||||||||||||||||||||
Sbjct: 243 cacacc---------atgcatctctttattccttggtctctcccattcactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 683
Length adjustment: 9
Effective length of query: 283
Effective length of database: 674
Effective search space:   190742
Effective search space used:   190742
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)