BAC Information

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BAC

Clone NameMSMg01-115O11
Chromosome5 (Build37)
Map Location 23,217,843 - 23,334,594
singlet/doubletdoublet
Overlap genePus7, Rint1
Upstream geneLOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream gene4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115O11.T7 (MSMg01no115_o11.b1)MSMg01-115O11.TJ (MSMg01no115_o11.g1)
ACCAG327417AG327418
length730740
length of high quality
(start - end)		614 (36 - 649)345 (80 - 424)
definitionCHROMAT_FILE: MSMg01no115_o11.b1 PHD_FILE: MSMg01no115_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:58 2005CHROMAT_FILE: MSMg01no115_o11.g1 PHD_FILE: MSMg01no115_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:58 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(23,217,843 - 23,218,453)(23,334,250 - 23,334,594)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATT
CACGATTCCTAAATCATGGTTTAGAGGTTGCCTTGCTTAAGTGCTAATCC
AGTCGCTCAGATTTCTCCCAGGACCCAAAACCCAGACAGGCTGGGTCTGT
GTCAGCAGTAGGGTAATCCAGGTCCTTTAGGCAGAGGTCCCTGCTGGACT
CGCTTGCAGGTATCCGCCTGAATATACCCTCAAACCTTAAAACAAACGAG
CACAAAACAAAAAGCCCAGCCTCTGTGCCAAGCGGCATTTAAAGGACACG
TGCGGCGGCGAGGACGCGCTTGAGTGGGCGAAATTACCCCTGTCCTTGCT
GACACTGGGATTATCCTGCCTCCTGTTACTTTCCGAGCTCTGATCTCATT
CGCTTCCTAAATAGGCGATGTCCCTGTCATCCGAGTCTTGGGCGGGCGGG
AAGCCCCGAGTGTGCCCAGGACCCGGGCCGTCCGGACGCCGCGCCTCCAC
CTGGGAGGGGACAAATCCGGGCAGCGCAAGGCCGATCTCCTGTCCCACAC
AGAAGGGACGCGTATGGGCAGGGACCCGCGCCACGGGCGAGCGCCGTGAA
AATCTCCGAGGCCACGTGGCGTGGTCCTGGGACTCGCAATGGTGAGAGTA
CTTACCAGGAGCGCGCCGCGGCGGAAGAGCAGGGCGCCAGGGCGGGACCG
AGTTTAAAACCGACCGGACATTGAGCACCG

NTTTCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAAGATTAAAGAATAAGG
GCTAAGCCAGCCTTGGCCAGGTGAGAACAATCTTTTCAATTCCATGGAGC
CTATAATTTAGAAAAGGAGCGAATGTTAATCCCAGGACCACCAACCCAAT
CTTTTTGTTGTTGTTGTTTGTTTTGTTTTGTTTTTGTTTTTCAAGACAGG
GTTTCTCTGTATAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGCC
TGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGAT
TGAAGGCGTGCGCCACCACGCCTGGCCACCAACTCAATCTTATGGAGGCA
CTTTAATAAGGGTTCAACCTCTCCCCCCACCCACCCCCCCAGCAGAGGTA
CTATAAGAGAAAGTTACTAGGATATGGGGGAAGTGCCTTTTTTTTATACC
TTTCTTCCTTCGCCCTCTCTACTCTTCTTCCCTTTTTCACTTTTTCCGTC
TTACTCCCTTTTTTTCTCTCTCCCTTTTCCTCTTTCCGTCTTCTTTACCT
TTTCCCTCCCCCCTTCGTTTATTCCACTCCCCACCTTCGTATTTCTTCCC
TCTCTTTTTTCCTCTCTCTCCCTTTTGTTTTTTTTCTCCCCTTTCCCCAT
CTTCTTCCATCTTATCCTCCTTTCCCTCCTCTCCCTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_o11.b1 MSMg01no115_o11.b1 CHROMAT_FILE:
MSMg01no115_o11.b1 PHD_FILE: MSMg01no115_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:58 2005
         (614 letters)



>mm_chr5_23217640_23218653
          Length = 1014

 Score = 1181 bits (611), Expect = 0.0
 Identities = 611/611 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaattcacgattcctaaatcatggtttagaggttgccttgcttaagtgctaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaattcacgattcctaaatcatggtttagaggttgccttgcttaagtgctaat 263

                                                                       
Query: 64  ccagtcgctcagatttctcccaggacccaaaacccagacaggctgggtctgtgtcagcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccagtcgctcagatttctcccaggacccaaaacccagacaggctgggtctgtgtcagcag 323

                                                                       
Query: 124 tagggtaatccaggtcctttaggcagaggtccctgctggactcgcttgcaggtatccgcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagggtaatccaggtcctttaggcagaggtccctgctggactcgcttgcaggtatccgcc 383

                                                                       
Query: 184 tgaatataccctcaaaccttaaaacaaacgagcacaaaacaaaaagcccagcctctgtgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaatataccctcaaaccttaaaacaaacgagcacaaaacaaaaagcccagcctctgtgc 443

                                                                       
Query: 244 caagcggcatttaaaggacacgtgcggcggcgaggacgcgcttgagtgggcgaaattacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caagcggcatttaaaggacacgtgcggcggcgaggacgcgcttgagtgggcgaaattacc 503

                                                                       
Query: 304 cctgtccttgctgacactgggattatcctgcctcctgttactttccgagctctgatctca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctgtccttgctgacactgggattatcctgcctcctgttactttccgagctctgatctca 563

                                                                       
Query: 364 ttcgcttcctaaataggcgatgtccctgtcatccgagtcttgggcgggcgggaagccccg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcgcttcctaaataggcgatgtccctgtcatccgagtcttgggcgggcgggaagccccg 623

                                                                       
Query: 424 agtgtgcccaggacccgggccgtccggacgccgcgcctccacctgggaggggacaaatcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtgtgcccaggacccgggccgtccggacgccgcgcctccacctgggaggggacaaatcc 683

                                                                       
Query: 484 gggcagcgcaaggccgatctcctgtcccacacagaagggacgcgtatgggcagggacccg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gggcagcgcaaggccgatctcctgtcccacacagaagggacgcgtatgggcagggacccg 743

                                                                       
Query: 544 cgccacgggcgagcgccgtgaaaatctccgaggccacgtggcgtggtcctgggactcgca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cgccacgggcgagcgccgtgaaaatctccgaggccacgtggcgtggtcctgggactcgca 803

                      
Query: 604 atggtgagagt 614
           |||||||||||
Sbjct: 804 atggtgagagt 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no115_o11.g1 MSMg01no115_o11.g1 CHROMAT_FILE:
MSMg01no115_o11.g1 PHD_FILE: MSMg01no115_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:58 2005
         (345 letters)



>mm_chr5_23334243_23334987
          Length = 745

 Score =  667 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggaagattaaagaataagggctaagccagccttggccaggtgagaacaatcttttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgggaagattaaagaataagggctaagccagccttggccaggtgagaacaatcttttcaa 293

                                                                       
Query: 61  ttccatggagcctataatttagaaaaggagcgaatgttaatcccaggaccaccaacccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttccatggagcctataatttagaaaaggagcgaatgttaatcccaggaccaccaacccaa 233

                                                                       
Query: 121 tctttttgttgttgttgtttgttttgttttgtttttgtttttcaagacagggtttctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tctttttgttgttgttgtttgttttgttttgtttttgtttttcaagacagggtttctctg 173

                                                                       
Query: 181 tatagccttggctgtcctggaactcactttgtagaccagcctggcctcaaactcagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tatagccttggctgtcctggaactcactttgtagaccagcctggcctcaaactcagaaat 113

                                                                       
Query: 241 ccacctgcctctgcctcccaagtgctgggattgaaggcgtgcgccaccacgcctggccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ccacctgcctctgcctcccaagtgctgggattgaaggcgtgcgccaccacgcctggccac 53

                                                        
Query: 301 caactcaatcttatggaggcactttaataagggttcaacctctcc 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  caactcaatcttatggaggcactttaataagggttcaacctctcc 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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