BAC Information

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BAC

Clone NameMSMg01-115P02
Chromosome5 (Build37)
Map Location 13,133,416 - 13,133,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115P02.T7 (MSMg01no115_p02.b1)MSMg01-115P02.TJ (MSMg01no115_p02.g1)
ACCAG327447AG327448
length732766
length of high quality
(start - end)
521 (46 - 566)141 (86 - 226)
definitionCHROMAT_FILE: MSMg01no115_p02.b1 PHD_FILE: MSMg01no115_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:02 2005CHROMAT_FILE: MSMg01no115_p02.g1 PHD_FILE: MSMg01no115_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGTGATTACCATAAGGTGGCAAAACTAACGAGAGACAAAGTAA
TCCAAGTAACAAATGTTTTAATGCTTGTGATATGACTTTTACTTAAGGAG
TCATGTGTTAGTTGCTCATGACTATAAACACATTTGTGGCGATTTGTATT
CCCCAAAGGCTGATAGGGAGTGCTTTTATTAGAAGGTGTGGCCTTGTTAG
AGGAACTCTATCACTGGGTGAAGGCTTTGGTGTTTCAAGTACTCAAGGCA
GTTCCTTTGTCATCCTCTCTTCCTATTGCCTGCCATCTGGGTATAGAACT
CCTGGCTTCCTCTCCAGCACGATGTCTGCCTCCATGCTACCATGTTTCTT
GCCATGATGATAATGAACTAAACCTCTGAACTGTAAGACAGCTCCAATTA
CATATTTCTCCTTTAAAAGAGTTATTATGGTGTCTCTTCATAGCAACAGA
AATTCTACCTAAGACCTACTCATTCTATAGGTGAGATAGAAGGATAAGGA
GGTTGGCATAAATAAGGTACATATCAGAACTTGTTTTAGAAGACCAAAAC
ACGAATGCAATAAAGCAAAATTAAAAGTACAACAATTTAGCATAGTATTT
TAAGAAATTTATGTTCCCATCCTTATTTCTGAATATGTAGTAGAAATATT
ACCCACTAGAGAACTTTACCAATACATCCTCA
NCCTTTTTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTACTTTCTACT
AGTGAGAAGAAACTCCATGAATAAGTCAACTTATAAAACAGAGTTTATTG
AAGTATCACTATCCCAGGGGACAGGGAGGGAGAAAGAGATGCGGGGAGAT
AGAGAGGAAGGGAGGTGGGGAGGGAGTTTTCTTTTTTCTCCTTCCCCTTC
CCCTTCCTTCTCCCTTCCCCCTCTCCCTCTTCCTCCCTCTTTTTCTTCCT
TTTCCTTTTCTCTTCCTCCCCCTCCTCTTTTCTTTTTTTTCTCTTCCGTT
CTCTTCTCCTCTCCCTCCTTTTCTCTCTTCCCCCCTCTTTTTTTTTGTCT
CTTTCTTCTTTTCTTTCCCCCTTCTTCCTTCTTTCCTTCTTTCTCCCCTC
CCGTTTCTCCCTTCCTCTTTCCTCTTTCCCCTTTCTCCTTCCCTCTTCTC
TCCTCTCTCTCTTATTTCTTCCTTCTCCCTCTCCCTCTTCCCTTCTCCCC
TCCTTCCTTCTTCTCTTCCGTCTCCTCCCCTCCCCTTTTTTTTCCCCTTC
CTCTCTTTTCTTCCGTCGTTTTTCTTCTCCTCCCTCCCCCCTCTCTTTTT
CCTCCTCCCCCCCTCCCCCTTTCTCTCTTTTTTTTTCCCTCACCCCCCCT
TTTTTCCCTTTCCTTTTTCCCCTTTTTCTTCCTTCTCTTCTTTTTACCCC
TCCTTTCTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_p02.b1 MSMg01no115_p02.b1 CHROMAT_FILE:
MSMg01no115_p02.b1 PHD_FILE: MSMg01no115_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:02 2005
         (521 letters)



>mm_chr5_13133416_13134336
          Length = 921

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagtgattaccataaggtggcaaaactaacgagagacaaagtaatccaagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaattccaagtgattaccataaggtggcaaaactaacgagagacaaagtaatccaagtaa 279

                                                                       
Query: 65  caaatgttttaatgcttgtgatatgacttttacttaaggagtcatgtgttagttgctcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caaatgttttaatgcttgtgatatgacttttacttaaggagtcatgtgttagttgctcat 219

                                                                       
Query: 125 gactataaacacatttgtggcgatttgtattccccaaaggctgatagggagtgcttttat 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gactataaacacatctgtggcgatttgtattccccaaaggctgatagggagtgcttttat 159

                                                                       
Query: 185 tagaaggtgtggccttgttagaggaactctatcactgggtgaaggctttggtgtttcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tagaaggtgtggccttgttagaggaactctatcactgggtgaaggctttggtgtttcaag 99

                                                                       
Query: 245 tactcaaggcagttcctttgtcatcctctcttcctattgcctgccatctgggtatagaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tactcaaggcagttcctttgtcatcctctcttcctattgcctgccatctgggtatagaac 39

                                                 
Query: 305 tcctggcttcctctccagcacgatgtctgcctccatgc 342
           ||||||||||||||||||||| ||||||||||||||||
Sbjct: 38  tcctggcttcctctccagcaccatgtctgcctccatgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)