Query= MSMg01no116_g02.b1 MSMg01no116_g02.b1 CHROMAT_FILE:
MSMg01no116_g02.b1 PHD_FILE: MSMg01no116_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:37 2005
(481 letters)
>mm_chr5_104099813_104100693
Length = 881
Score = 876 bits (453), Expect = 0.0
Identities = 474/481 (98%)
Strand = Plus / Plus
Query: 1 catactaaggttgaggacagcctgagatccacatgactctgtttcaaaaagcaataaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactaaggttgaggacagcctgagatccacatgactctgtttcaaaaagcaataaaaa 260
Query: 61 gcttcgcataaaacaaccaagttataatgaaaaggaatcagggcagagattgtgaagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcgcataaaacaaccaagttataatgaaaaggaatcagggcagagattgtgaagcag 320
Query: 121 tgcagcttgggaaatgaaggtgactggatagaggtttggctgggtgagggggcatcttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagcttgggaaatgaaggtgactggatagaggtttggctgggtgagggggcatcttag 380
Query: 181 gagtccgggtcctgagcagtagtgacctctcaggagcaacacctttgcacgggagcctgg 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtccaggtcctgagcagtagtgacctctcaggagcaacacctttgcacgggagcctgg 440
Query: 241 gagtatccaatatccaggtcactcagctcaggctaagccttatcaacaaccgattaatac 300
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 441 gagtatccaacatccaggtcactcagctcaggctaagccttatcaacagccaattaatac 500
Query: 301 agaggctgctctcccagctggtgtaagggacagaaagcactcaccccacagcactgcacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaggctgctctcccagctggtgtaagggacagaaagcactcaccccacagcactgcacc 560
Query: 361 aagtccttgtctctctgagctcagacaaagattttctagagattttggcttcgtttcttt 420
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 561 aagtccttgtctctctgagctcagacaaagattttgtagagattttggctttgtttcttt 620
Query: 421 ctttgactgatcctcctgccgcagcttgcatcccaggagttccagcaacaatacccaatg 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgactgatcctcctgccacagcttgcatcccaggagttccagcaacaatacccaatg 680
Query: 481 t 481
|
Sbjct: 681 t 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_g02.g1 MSMg01no116_g02.g1 CHROMAT_FILE:
MSMg01no116_g02.g1 PHD_FILE: MSMg01no116_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:37 2005
(370 letters)
>mm_chr5_104225351_104226119
Length = 769
Score = 656 bits (339), Expect = 0.0
Identities = 363/371 (97%), Gaps = 3/371 (0%)
Strand = Plus / Minus
Query: 1 aacacgctaggatctccttctcattaggaccctcacctgatacctgctggatgcagatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aacacgctaggatctccttctcattaggaccctcacctgatacctgctggatgcagatag 510
Query: 61 aacagtcatcaagctatgctcctcactgtcttctgtaggaaaaacatgagccgattcttc 120
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 509 aacagtcagcaagctatgctcctcactatcttctgtaggaaaaacatgagccgattcttc 450
Query: 121 aaactggaagagtcttggaaatctcagatgtcaagatcatctttacagtgtaagttctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaactggaagagtcttggaaatctcagatgtcaagatcatctttacagtgtaagttctgc 390
Query: 181 ctacctacactagggctgatgagcaagattctgatagccatgcaagcctccagcactgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctacctacactagggctgatgagcaagattctgatagccatgcaagcctccagcactgac 330
Query: 241 tctatcagggaccgtgtatcagttaagctcactgcatgaagcagcatgaacagaagtcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctatcagggaccgtgtatcagttaagctcactgcatgaagcagcatgaacagaagtcat 270
Query: 301 ccttaatgaaacatgggcctt-gggggtgcgggggggggcagaatcttgtcttactaggt 359
||||||||||||||||||||| ||||| | ||||||||||||| ||||||| |||||||
Sbjct: 269 ccttaatgaaacatgggcctttggggg-g-gggggggggcagagtcttgtcccactaggt 212
Query: 360 accctgagcca 370
|||||||||||
Sbjct: 211 accctgagcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space: 274360
Effective search space used: 274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
