Query= MSMg01no117_c18.b1 MSMg01no117_c18.b1 CHROMAT_FILE:
MSMg01no117_c18.b1 PHD_FILE: MSMg01no117_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:38 2005
(598 letters)
>mm_chr5_148310797_148311794
Length = 998
Score = 998 bits (516), Expect = 0.0
Identities = 568/600 (94%), Gaps = 27/600 (4%)
Strand = Plus / Plus
Query: 6 gaattccatcca---ttccgtacagtgtgagctttatgaagagagcggggacgtaaaact 62
|||||||||||| | |||||||||||||||||||||||||| || |||||||||||
Sbjct: 206 gaattccatccacagt---gtacagtgtgagctttatgaagagagtggagacgtaaaact 262
Query: 63 aaaagcttcaacgctgcctctagtttccagtatccactagtaatgtccagaaagtagcca 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaagcttcaacgctgcctctagtttccagtatccactagtaatgtccagaaagtagcca 322
Query: 123 ctggagaccactttcttttctaacaaagtctccttttgtctacctcatgtgggttgtact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctggagaccactttcttttctaacaaagtctccttttgtctacctcatgtgggttgtact 382
Query: 183 agagcctgcactctgctctttaagaatgtatattcaaacaggtaaacctccctctgctct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agagcctgcactctgctctttaagaatgtatattcaaacaggtaaacctccctctgctct 442
Query: 243 ggactttgcttattgttttgcctctggcaatatgcctccgtctgtggctaatttgctgcc 302
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 ggactttgcttattgttctgcctctggcaatatgcctccgtccgtggctaatttgctgcc 502
Query: 303 aggtttggcgacctgagattaacccccaggaagtttaagttgtcctctgacctccacacc 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggtttggcgacctgagattaacccccaggaagtttaagttgtcctctgacctccac--- 559
Query: 363 atatgtgcaagtaataaaattttatggaaaagaaaatacttgagatgaattttagaggat 422
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 --------------taaaattttatggaaaagaaaatacttgagatgaattttagaggat 605
Query: 423 gggtgcagtttgttttgattatccttttggtg-t---tctgtctgtctgtctgtctgtct 478
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 606 gggtgcagtttgttttgattatccttttggtggtctgtctgtctgtctgtctgtctgtct 665
Query: 479 gttcaagacagagtttctctgtgtggcccttactgtctggaacttgctctgtagaccagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gttcaagacagagtttctctgtgtggcccttactgtctggaacttgctctgtagaccagg 725
Query: 539 ctggcctcaaactcacagagatttgcctgctttccaaatgctgggattaaaggtgtgctt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctggcctcaaactcacagagatttgcctgctttccaaatgctgggattaaaggtgtgctt 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_c18.g1 MSMg01no117_c18.g1 CHROMAT_FILE:
MSMg01no117_c18.g1 PHD_FILE: MSMg01no117_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:38 2005
(243 letters)
>mm_chr5_148448434_148449077
Length = 644
Score = 383 bits (198), Expect = e-111
Identities = 230/254 (90%), Gaps = 23/254 (9%)
Strand = Plus / Minus
Query: 1 tatagattctttttt-taaaaaatccttctttggggtatgaagtgagatgagggagagaa 59
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tatagattcttttttaaaaaaaatccttctttggggtatgaagtgagatgagggagagaa 253
Query: 60 ggaaagaaagtgagagagaattggggtaatgaggctggctcctcagctcctcagctcctc 119
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 252 ggaaagaaagtgagagagaattggggtaatgaggctg--------gctcctcagctcctc 201
Query: 120 ccaaagtggaaaaaaacaaaaacacacacacccctacccccccaccccccaccc------ 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccaaagtggaaaaaaacaaaaacacacacacccctacccccccaccccccaccccccacc 141
Query: 174 --------cccacatcattagagacctggaaaccaggccagcaaccctggggtcatacct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ccccacatcccacatcattagagacctggaaaccaggccagcaaccctggggtcatacct 81
Query: 226 aaaagagccccttg 239
||||||||||||||
Sbjct: 80 aaaagagccccttg 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space: 148590
Effective search space used: 148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
