Query= MSMg01no117_p06.b1 MSMg01no117_p06.b1 CHROMAT_FILE:
MSMg01no117_p06.b1 PHD_FILE: MSMg01no117_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:39 2005
(626 letters)
>mm_chr5_24715835_24716859
Length = 1025
Score = 1106 bits (572), Expect = 0.0
Identities = 611/624 (97%), Gaps = 4/624 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaactgatgcgccaacagtagcattccatatgtttttaggaaaattaaagatc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaactgatgagccaacagtagcattccatatgtttttaggaaaattaaagatc 264
Query: 65 actatttttctcaaatttattcactattattaactcttttctaggtcacctgcaatgaca 124
||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 265 actatttctctcaaatttattcactatt-tttactctcttctaggtcacctgcaatgaca 323
Query: 125 ggaggaatttttgctataaacagacattattttaatgaacttggacaatatgacaacggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaggaatttttgctataaacagacattattttaatgaacttggacaatatgacaacggc 383
Query: 185 atggatatttgtggaggagaaaatgtggaactttcactaagagtaagtcagattccttgt 244
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 384 atggatatttgtggaggagaaaatgtggaactttcgctaagagtaagtgagattccttgt 443
Query: 245 ttccctcatgcagctttgtgtgtatacaaagagaggtgatggttcatcttgttgtggaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttccctcatgcagctttgtgtgtatacaaagagaggtgatggttcatcttgttgtggaga 503
Query: 305 atggagcccagtttgtgcctactgggaagagccctttcctgagcaagagtgcaatctgac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atggagcccagtttgtgcctactgggaagagccctttcctgagcaagagtgcaatctgac 563
Query: 365 tttcataagatcacgtgttttctccatgaacatgctagactggtgacacacagaagggcg 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttcatatgatcacgtgttttctccatgaacatgctagactggtgacacacagaagggcg 623
Query: 425 tgcaacagatggcagggctccagaaaacacgagataggacaatatgcatggtgcagaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcaacagatggcagggctccagaaaacacgagataggacaatatgcatggtgcagaaat 683
Query: 485 ctga-tattttaaatctatgtgggccctcttcttttcccctctatcctgttttgtgtgtt 543
|| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 ct-agtattttaaacctatgtgggccctcttcttttcccctctatcctgttttgtgtatt 742
Query: 544 ttattttctcttttcttcctctctttcccc-gtccttcctcctttccttccttttcgttt 602
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 743 ttattttctcttttcttcctctctttcccccgtccttcctcctttccttccttttcgttt 802
Query: 603 ctttctggtagctgatcattttag 626
||||||||||||||||||||||||
Sbjct: 803 ctttctggtagctgatcattttag 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1025
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1015
Effective search space: 625240
Effective search space used: 625240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_p06.g1 MSMg01no117_p06.g1 CHROMAT_FILE:
MSMg01no117_p06.g1 PHD_FILE: MSMg01no117_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:39 2005
(604 letters)
>mm_chr5_24878116_24879119
Length = 1004
Score = 1160 bits (600), Expect = 0.0
Identities = 603/604 (99%)
Strand = Plus / Minus
Query: 1 tccacaggatgtgtggattttgaaatgactcttgctgttgacagttgtgacaaagatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tccacaggatgtgtggattttgaaatgactcttgctgttgacagttgtgacaaagatagt 745
Query: 61 tcatgccaaggagacaaatatgtagagttaccagctgaggaagaatcgacattctcttca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 tcatgccaaggagacaaatatgtagagttaccagctgaggaagaatcaacattctcttca 685
Query: 121 gcaactgacctgaacaaggcagatgtgtcttcttcctccacactttgttcagacttgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcaactgacctgaacaaggcagatgtgtcttcttcctccacactttgttcagacttgcct 625
Query: 181 tcatgtgacatgctgcacggttaccctccagctttcaactctgctgctggaagcatcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcatgtgacatgctgcacggttaccctccagctttcaactctgctgctggaagcatcatg 565
Query: 241 ccaacaacatacatctcagtcactccaaaaattggcatgggtaaaccagctattaccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccaacaacatacatctcagtcactccaaaaattggcatgggtaaaccagctattaccaaa 505
Query: 301 agaaaattttctcctggtagaccccggtccaaacaggtagggtgatgttaatgatgacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaaaattttctcctggtagaccccggtccaaacaggtagggtgatgttaatgatgacag 445
Query: 361 aaaagatattgcagatatcatttaaaatgggaaggatacatttagctttggttgactttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaagatattgcagatatcatttaaaatgggaaggatacatttagctttggttgactttt 385
Query: 421 catccatagaactcagttttaatgtttctgtttgggaaggagtgcattatttaaaaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catccatagaactcagttttaatgtttctgtttgggaaggagtgcattatttaaaaaaat 325
Query: 481 atgctcttaactgagaatgtaatttattaaacttcaggatataaaaatatgatctatttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgctcttaactgagaatgtaatttattaaacttcaggatataaaaatatgatctatttg 265
Query: 541 attatagtatctatagaaaacaattttaaagatggttttagttccaaagtaatcttagaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attatagtatctatagaaaacaattttaaagatggttttagttccaaagtaatcttagaa 205
Query: 601 cttt 604
||||
Sbjct: 204 cttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
