Query= MSMg01no118_b05.b1 MSMg01no118_b05.b1 CHROMAT_FILE:
MSMg01no118_b05.b1 PHD_FILE: MSMg01no118_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:49 2005
(612 letters)
>mm_chr5_42920574_42921585
Length = 1012
Score = 1052 bits (544), Expect = 0.0
Identities = 592/612 (96%), Gaps = 7/612 (1%)
Strand = Plus / Plus
Query: 1 aagcctgaggcactgagacaccttttcttgttccaaaacaccaatagcttccagtaggtc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aagcctgaggcactgagacaccttttcttgttccaaaacaccaatagctttaagtaggtc 260
Query: 61 actgaagaaactcagaggtctatcacaaattataaacaagaataattcatatgagaacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgaagaaactcagaggtctatcacaaattataaacaagaataattcatatgagaacac 320
Query: 121 atcagtcttacttttcatcatcacttccacctttatgtcaccttatttttacccaaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcagtcttacttttcatcatcacttccacctttatgtcaccttatttttacccaaaacc 380
Query: 181 cttttgtaaacattaaccagagactcctatctctagtaaatggtggtgaatacaaagact 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgtaaacattaatcagagactcctatctctagtaaatggtggtgaatacaaagact 440
Query: 241 catggcagctcaaagtgtgcggaagacatgtagtgctggatagcttaatgtcaacttgac 300
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 catggcagctcaaagtgcgctgaagacatgtagtgctggatagcttaatgtcaccttgac 500
Query: 301 aaactaaagtcatctgagaggaggggacctcaattaagaaaatgccccataaggaaaggt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 aaactaaagtcatctgagaggaggggacctcaattaagaaaatgccccataaggtaaggc 560
Query: 361 tataggcaatactgtaaggcttttacataattagttattgaaagaggtggacacagccta 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tataggcaatactgtaaggcttttacataattagttattgatagaggtggacacagccta 620
Query: 421 ttgttcacagagccatccctgggctggtggcccttggttctataagaacgtaggctgagc 480
| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 tggttcacagagccatccctgggctggtggcccttggttctataag-------gctgagc 673
Query: 481 aagacagtaaacagcctctgcaccaaatgcctctatcttccttccttgcttgagttcctg 540
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 674 aagacagtaaacagcctctgcaccaaatgcctctatcttccttccttgtttgagttccta 733
Query: 541 tcctgacttccttgatgctgaacaagaaaatgaaagtataagacaaataaatttttccct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcctgacttccttgatgctgaacaagaaaatgaaagtataagacaaataaatttttccct 793
Query: 601 gaactacttgtt 612
|||| |||||||
Sbjct: 794 gaaccacttgtt 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_b05.g1 MSMg01no118_b05.g1 CHROMAT_FILE:
MSMg01no118_b05.g1 PHD_FILE: MSMg01no118_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:49 2005
(631 letters)
>mm_chr5_43028353_43029383
Length = 1031
Score = 1149 bits (594), Expect = 0.0
Identities = 618/626 (98%)
Strand = Plus / Minus
Query: 1 tagaagaacacttgtgcatagaataggagcattgaaagagagtcatggctcatttggaca 60
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tagaaggacacttgtccatagaataggagcattgaaagagagtcatggctcatttggaca 767
Query: 61 aaaatgacagagttctttctctggtttcttgtggcttgttgaatatattattaatcacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aaaatgacagagttctttctctggtttcttgtggcttgttgaatatattattaatcacag 707
Query: 121 gattttcagggtgagtgggtttgaagatgacattagtgagtggatatggaggtgacaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gattttcagggtgagtgggtttgaagatgacattagtgagtggatatggaggtgacaatg 647
Query: 181 gccttgctcagctaaaactcaaagcttgtaggatcatattctttttgaaaggacacaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gccttgctcagctaaaactcaaagcttgtaggatcatattctttttgaaaggacacaata 587
Query: 241 cttttattctcttcaattactcctgctccatttgttgatgacccacctctcccacattaa 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 586 cttttattctcttcaattactcctgctcgatttgttgatgacccacctctcccacattaa 527
Query: 301 atgtcaaaaagataacaattttgttctactaccatagtcacatgcccttcagacttctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atgtcaaaaagataacaattttgttctactaccatagtcacatgcccttcagacttctgc 467
Query: 361 ctcccagttccactttaagggtccttgtgatctgtttgtgccatacaggtgatctatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 466 ctcccagttccactttaagggtccttgtgatctgtttgtgccatacaggtgatctgtgac 407
Query: 421 cctctcccacctcctgcattagctacactacgcaggagcctagaattcctctctatcctt 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 406 cctctcccacctcctgcattagctacgctacgcaggagcctagaattcctctctatccta 347
Query: 481 aatgtcctttccacaaaaggaagcctcaccactgccttctcagaagtctgacatcttcaa 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 346 aatgtcctttccacaaaaggaaacctcaccactgccttctcagaagtctgacatcttcaa 287
Query: 541 gcttattgctctgtctgctgttgagatagtcaatattgaaggctgccatccagacaggag 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 286 gcttattgctctgtctgctgttgagatagtcaatgttgaaggctgccatccagacaggag 227
Query: 601 aaaacacctgtacctaaacagaaaca 626
||||||||||||||||||||||||||
Sbjct: 226 aaaacacctgtacctaaacagaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
