BAC Information

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BAC

Clone NameMSMg01-118C21
Chromosome5 (Build37)
Map Location 41,136,365 - 41,136,911
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118C21.T7 (MSMg01no118_c21.b1)MSMg01-118C21.TJ (MSMg01no118_c21.g1)
ACCAG329123AG329124
length705712
length of high quality
(start - end)
563 (41 - 603)547 (75 - 621)
definitionCHROMAT_FILE: MSMg01no118_c21.b1 PHD_FILE: MSMg01no118_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:57 2005CHROMAT_FILE: MSMg01no118_c21.g1 PHD_FILE: MSMg01no118_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTC
TGTGAAGAACACTCTTTTTTTTTTTAACCTGTAGATTTTTTTTAGTGTTT
ATTTTATTTATTTACATATCAAACATTAGTCACCTTCCATCTGTAACCCC
ACCCCCACCCATTCTGTTCTCCTTGCCCTTTTTCTATGAGGGGGCTCCCC
CACCACCCACCCACTCCCACCCCTCCTAACCACCCTGGAATTTCCCTATT
CTGGGGCATCAAGTCTTCATAGGACCAAGGGCCTTCCCCTCCCACTAATG
CCAAACATGGTCACCCTCTGCTACATATGCAGCTTGAACCATGAACACCT
CCATGTGTCTTCTTTGGTTAGTGGTTTAGTCCCTGGGAGATCTGGGGAGT
CTGGTTGGTTGATACTGTTGTTCTTCCCATGGGGCTGTAAAACCATTCAG
CTCTTTCACTCCTTCCCCTGACTCCTGCACTGTGTTTCCCTTGCTCAATC
TGACAGTTGGCTACAATCATCTGCTTCTCTCTTGGCCAGGCTCTAGCAGA
CAGAGCCTGGCAGACTGCTGTCTCAGTGGACAGCCGTACCAGGCTTTGTC
TGCAATAACTTCTTGGCATCGGCAATAGTTTGATGGGTCTGGGTTTGGTG
GCTGCATATGGGATGGATCCCCAGGTGGGGCAGTCCCTGGATGGGCTTTA
CTTCG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAATACAACTAATTCACAGGTCTAGCTCAATCA
GTGAACTTCAGATTCAGTGAGGACACCTGATAAATAAAGTTGAAAATAGT
CACGGAAAACAGCTAATATCAACAAAGGGCCTCCACATGCACACAGTTGT
GTGTGCACATGTGCCCATATTCAAATGAATGCATATGCACACATGCATAC
CACATGCATGAGCATGTACATTACATAAGTAAAAGTATAACCATAAAATA
AAAGGCAGCTTTTCTAGATGTAGTAATTTCACCTTTCTTTTATCTAGTTT
TGGTCTTCAAATATATCACTGCATGCTTTCCCGGCTGTCTTGGTTGGAGA
TAATGGATCTAATGGAATTTCTGTGTCCTTCTAACTTATCCCTCTGAGGA
ACAACTCATTAAGACTGTCTTAGTTACTGTACTGTTCTATTGCTTTGAAA
AGACTCCATAACCTAGGTAACTGTTAAAAAATAAAACATATAATTTGGGA
CTTTCTTACATTGTTAGAGGGCTAGTCCATGATCATTATGACAGGAAGCA
GACAGGTATGGTGCTGGAGCAGCAGTAATGGAGAGCTTACATCCTGATCC
ACAGGCAGCAGGAAGAGAGAGTAAAAGGGAGGGGAGAATGGCATGGACTT
TTAAAATTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_c21.g1 MSMg01no118_c21.g1 CHROMAT_FILE:
MSMg01no118_c21.g1 PHD_FILE: MSMg01no118_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:57 2005
         (547 letters)



>mm_chr5_41136200_41137146
          Length = 947

 Score = 1035 bits (535), Expect = 0.0
 Identities = 544/547 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaattcacaggtctagctcaatcagtgaacttcagattcagtgaggacacctgataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 712 actaattcacaggtctagctcaatcagtgaacttcagattcagtgaggaaacctgataaa 653

                                                                       
Query: 61  taaagttgaaaatagtcacggaaaacagctaatatcaacaaagggcctccacatgcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 taaagttgaaaatagtcacggaaaacagctaatatcaacaaagggcctccacatgcacac 593

                                                                       
Query: 121 agttgtgtgtgcacatgtgcccatattcaaatgaatgcatatgcacacatgcataccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agttgtgtgtgcacatgtgcccatattcaaatgaatgcatatgcacacatgcataccaca 533

                                                                       
Query: 181 tgcatgagcatgtacattacataagtaaaagtataaccataaaataaaaggcagcttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgcatgagcatgtacattacataagtaaaagtataaccataaaataaaaggcagcttttc 473

                                                                       
Query: 241 tagatgtagtaatttcacctttcttttatctagttttggtcttcaaatatatcactgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tagatgtagtaatttcacctttcttttatctagttttggtcttcaaatatatcactgcat 413

                                                                       
Query: 301 gctttcccggctgtcttggttggagataatggatctaatggaatttctgtgtccttctaa 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 actttcccggctgtcttggttggagataatggatctaatggaatttctgtgtccttctaa 353

                                                                       
Query: 361 cttatccctctgaggaacaactcattaagactgtcttagttactgtactgttctattgct 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttatccctctgacgaacaactcattaagactgtcttagttactgtactgttctattgct 293

                                                                       
Query: 421 ttgaaaagactccataacctaggtaactgttaaaaaataaaacatataatttgggacttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttgaaaagactccataacctaggtaactgttaaaaaataaaacatataatttgggacttt 233

                                                                       
Query: 481 cttacattgttagagggctagtccatgatcattatgacaggaagcagacaggtatggtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cttacattgttagagggctagtccatgatcattatgacaggaagcagacaggtatggtgc 173

                  
Query: 541 tggagca 547
           |||||||
Sbjct: 172 tggagca 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)