BAC Information

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BAC

Clone NameMSMg01-118M16
Chromosome5 (Build37)
Map Location 86,921,227 - 86,921,581
singlet/doubletsinglet
Overlap gene9930032O22Rik
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a
Downstream geneTmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118M16.T7 (MSMg01no118_m16.b1)MSMg01-118M16.TJ (MSMg01no118_m16.g1)
ACCAG329576AG329577
length673695
length of high quality
(start - end)
485 (59 - 543)295 (76 - 370)
definitionCHROMAT_FILE: MSMg01no118_m16.b1 PHD_FILE: MSMg01no118_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:45 2005CHROMAT_FILE: MSMg01no118_m16.g1 PHD_FILE: MSMg01no118_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACACTCCTATATCAGAGGATCCGCGGAATTCTTCTAATTA
CACTGCCAGTTTTGCCAGACCATTTGTTGAAAATACTGTCTTTTTTTCCA
CTGAATCGTTTTAGCTCCCTTTGTCAAAGATCAAGTAACCATAGGTGTGT
GGGTTCATTTCTGGGTCTTCAATTCTATTCCATTTATCTACCCGTCTGTC
ATTGTACCAGTAACCATGCAGTTTTTATCACAATTGCTCTGCAGTAAAGC
TTGAGGTCTGGCATGGTGATTCCACCAGAGGTTCTTCTATTGTTGAGGAT
AGTTTTTGGTATCCTAGATTTTTTGTTATTCCAGAAGAATTTGCAAATTG
CCCTTTCCAACTCACTGGAGATTGAGTTGGAATTTTGAACCTGTGAAGAA
AAATACATAACTGTGCATAGTATATATGAATCTATATTTTCTTCTGTCTG
ACAGACTGCGGCTCGGGGATGGAGTACCCACCCATAGCAAGAATCGCTGA
TGGCAAACCTGCAGACAAAGCTTCTTGGCCTTGGCAAAGCAGCCTGCAGG
TGGAAGGCATCCACCTCTGCGGTGCTTCTCTCATTGGATCCCAGTGGCTC
GTGACCTCTGCTCACTGCTTTGAAAAGTGAGTCCTCCGGAAACACCCTCC
AGTCCCCCAGTGAGCCCTCAAAA
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAATTCTGAGAATCTATGCCTTAA
AGACAAGGGCACTCACACTTGTAAAATAAGCATTGCTAAAGTTTAAATTG
CACATCGAACCACATACATTATTAATGGGAGACTTCAATAGCCCACTGTC
ACCAACTGACAGATCATCCAGGAAAAAACTAAGCAGAGAAATAACAAAAC
TAACAGACATTACGAGGCAATTTCCTAAACAGAACACCAATGTCTCAGGA
TCTAAGATCAATGATTGATAAATGGTACCTCATGAAACTGAAATTTTCTA
TGAGGTAAAGAGTACTATCAAGTGGACAAAACAGAAACCTACAAATTAGA
AAAGAATCTTCACTAATCCTACCTTTGACAGAGGGGTAATAATCCAAAAT
TTATAAAGTACTCAAGAAGTTAGGCATCAACAATCCAAATAACCCAATTA
AAAAAGGGTACAGAGCTAAACAGGGAATTCTCAACAGAGGAATCTCTAAT
GGAGAAGACGCACTTACAAAATGTTCAAAGCCCTTAGTCATCAGGGAAAT
GCCAATCAAAACAACTCTGAGGGTCTAACTTGCATTGGTCAGAATTGTTA
TGATCAAAAAACTCAGGTGCTAAGCCATGCTGGCAAGGATGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_m16.b1 MSMg01no118_m16.b1 CHROMAT_FILE:
MSMg01no118_m16.b1 PHD_FILE: MSMg01no118_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:45 2005
         (485 letters)



>mm_chr5_86920697_86921581
          Length = 885

 Score =  656 bits (339), Expect = 0.0
 Identities = 351/355 (98%)
 Strand = Plus / Minus

                                                                       
Query: 131 tacccgtctgtcattgtaccagtaaccatgcagtttttatcacaattgctctgcagtaaa 190
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tacctgtctgttattgtaccagtaaccatgcagtttttatcacaattgctctgcagtaaa 826

                                                                       
Query: 191 gcttgaggtctggcatggtgattccaccagaggttcttctattgttgaggatagtttttg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gcttgaggtctggcatggtgattccaccagaggttcttctattgttgaggatagtttttg 766

                                                                       
Query: 251 gtatcctagattttttgttattccagaagaatttgcaaattgccctttccaactcactgg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 765 gtatcctagattttttgttattccagaagaatttgcaaattgccctttctaactcactgg 706

                                                                       
Query: 311 agattgagttggaattttgaacctgtgaagaaaaatacataactgtgcatagtatatatg 370
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 705 agattgagttggaattttgaacctgtgaataaaaatacataactgtgcatagtatatatg 646

                                                                       
Query: 371 aatctatattttcttctgtctgacagactgcggctcggggatggagtacccacccatagc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aatctatattttcttctgtctgacagactgcggctcggggatggagtacccacccatagc 586

                                                                  
Query: 431 aagaatcgctgatggcaaacctgcagacaaagcttcttggccttggcaaagcagc 485
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aagaatcgctgatggcaaacctgcagacaaagcttcttggccttggcaaagcagc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)