BAC Information

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BAC

Clone NameMSMg01-119L02
Chromosome5 (Build37)
Map Location 39,948,676 - 40,074,573
singlet/doubletdoublet
Overlap geneHs3st1
Upstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119L02.T7 (MSMg01no119_l02.b1)MSMg01-119L02.TJ (MSMg01no119_l02.g1)
ACCAG330247AG330248
length687690
length of high quality
(start - end)
173 (49 - 221)604 (80 - 683)
definitionCHROMAT_FILE: MSMg01no119_l02.b1 PHD_FILE: MSMg01no119_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:54 2005CHROMAT_FILE: MSMg01no119_l02.g1 PHD_FILE: MSMg01no119_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,948,676 - 39,948,844)(40,073,970 - 40,074,573)
sequence
NGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGTTATTGCCTTGTGATCTGGCCAAATGGCATTAGTCTCTG
CATTTGTATCTTCTCTGCATATGGGATTGGCTCAACTTTCCCTCTTCCTA
AATCCCTTGCCAGTGTTCTGTCTGCAGCTATGGAAATGGATTCCTGTCTT
CTTTTGGAGCAGTATTGCATAAAGTGTCTGGNNAATACACTATTTCTTTT
CCCTTTCACCACAAAGCATACCCGTTCCCCCTGGCTATTCTTCAAAAGAT
GAAGGGGAGAGCGTTCCACTATAGCTTGTTTGTGCCATAATTGTTCATTA
GTGGGGCCATGGGTAAAGGAAAAGTTTCTTTGTGACTTGCAGAGTCCTGG
AATCCTCATATGCAGAAAGCTTTGTCTCCCAAAAGCCACCGGGTATACCC
CCATTTGTAAGATGAAGGCTCCAGAAGTTCCCACACAGGAATTTTGGTGG
ACTAAAAATTTTTATCCACCTTTTTTCCCGTGTATTTAATAACAAATTTT
GCCCCATTTTTTTAGGAAAAAAAAAATGGGCAAAAACCCTTCTTTAAAAG
TGGGTCGTTAAAAAAAAAAAATTTTCTTTTGCCCTTGTGTTCGGGACCCT
GCGGGTTTTTTTCGCCTTTGGTCTGGATTTTTTTGTC
NNNNNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGGCTAAAATGTATTTAA
TTAATGAAAATCACAAAGAGGAAGACATGAAGATGGGCGATGGAGGTGAT
GGAGTGTCCTAGTATTAATGGAGGGGAAGAATGAGAGGTCAATCAAGAAA
ATCAGTGTGATAAAGATTATAAACAGGTATGAAATTTTTCAAACAACAAA
TTGAAATAAATAAATAAACTAAAACAATCAAATAAAAACCAAGATCATGA
TCTTGTTTTATCCTAAAGGTAATTACAGAGACTATTAGTTTTCACTTTGA
TGGTAAAAGGAATTACCTAGCCTCCTTGCTAACAAAAATAATGAGAGCCT
TACACTTTTTATTACAAGTAGTCTCTGGAAAGAATTCGAGTTTGTATTGA
CAGATTGGGTTTGGCTGTTCTATGGAACAACTATAATCACGGCTCCCTCA
CTGACTGGCACAGTTGATTTCTTCTTCCCAGGATGCTCTCAGGGTGACTT
GGACTCTAACCACTCTTTCTCCCACAGGCATTGTAACACCATGACAAAGG
ACTCACCTCCATGTACTGAAAGACAACAACCCAGTGATCTAGCTTCCAAT
AGACTCCCCTCAAAAGAGCCTAGTTGATTTGTTCACATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_l02.b1 MSMg01no119_l02.b1 CHROMAT_FILE:
MSMg01no119_l02.b1 PHD_FILE: MSMg01no119_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:54 2005
         (173 letters)



>mm_chr5_39948472_39949044
          Length = 573

 Score =  296 bits (153), Expect = 5e-85
 Identities = 165/169 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgttattgccttgtgatctggccaaatggcattagtctctgcatttgtatctt 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgttagtgttttgtgatctggccaaatggcattagtctctgcatttgtatctt 264

                                                                       
Query: 65  ctctgcatatgggattggctcaactttccctcttcctaaatcccttgccagtgttctgtc 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgcatatgggattggctcgactttccctcttcctaaatcccttgccagtgttctgtc 324

                                                            
Query: 125 tgcagctatggaaatggattcctgtcttcttttggagcagtattgcata 173
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcagctatggaaatggattcctgtcttcttttggagcagtattgcata 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no119_l02.g1 MSMg01no119_l02.g1 CHROMAT_FILE:
MSMg01no119_l02.g1 PHD_FILE: MSMg01no119_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:54 2005
         (604 letters)



>mm_chr5_40073770_40074773
          Length = 1004

 Score = 1152 bits (596), Expect = 0.0
 Identities = 602/604 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgggctaaaatgtatttaattaatgaaaatcacaaagaggaagacatgaagatgggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attgggctaaaatgtatttaattaatgaaaatcacaaagaggaagacatgaagatgggcg 745

                                                                       
Query: 61  atggaggtgatggagtgtcctagtattaatggaggggaagaatgagaggtcaatcaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atggaggtgatggagtgtcctagtattaatggaggggaagaatgagaggtcaatcaagaa 685

                                                                       
Query: 121 aatcagtgtgataaagattataaacaggtatgaaatttttcaaacaacaaattgaaataa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 684 aatcagtgtgataaagattataaacaggtatgaaaattttcaaacaacaaattgaaataa 625

                                                                       
Query: 181 ataaataaactaaaacaatcaaataaaaaccaagatcatgatcttgttttatcctaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataaataaactaaaacaatcaaataaaaaccaagatcatgatcttgttttatcctaaagg 565

                                                                       
Query: 241 taattacagagactattagttttcactttgatggtaaaaggaattacctagcctccttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taattacagagactattagttttcactttgatggtaaaaggaattacctagcctccttgc 505

                                                                       
Query: 301 taacaaaaataatgagagccttacactttttattacaagtagtctctggaaagaattcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taacaaaaataatgagagccttacactttttattacaagtagtctctggaaagaattcga 445

                                                                       
Query: 361 gtttgtattgacagattgggtttggctgttctatggaacaactataatcacggctccctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtttgtattgacagattgggtttggctgttctatggaacaactataatcacggctccctc 385

                                                                       
Query: 421 actgactggcacagttgatttcttcttcccaggatgctctcagggtgacttggactctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgactggcacagttgatttcttcttcccaggatgctctcagggtgacttggactctaa 325

                                                                       
Query: 481 ccactctttctcccacaggcattgtaacaccatgacaaaggactcacctccatgtactga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccactctttctcccacaggcattgtaacaccatgacaaaggactcacctccatgtactga 265

                                                                       
Query: 541 aagacaacaacccagtgatctagcttccaatagactcccctcaaaagagcctagttgatt 600
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 aagacaacaacccagtgatctagcttccaatagactccccccaaaagagcctagttgatt 205

               
Query: 601 tgtt 604
           ||||
Sbjct: 204 tgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)