BAC Information

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BAC

Clone NameMSMg01-120A16
Chromosome5 (Build37)
Map Location 32,810,281 - 32,810,662
singlet/doubletsinglet
Overlap genenone
Upstream geneXab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb
Downstream geneLOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120A16.T7 (MSMg01no120_a16.b1)MSMg01-120A16.TJ (MSMg01no120_a16.g1)
ACCAG330508AG330509
length689681
length of high quality
(start - end)
---405 (44 - 448)
definitionCHROMAT_FILE: MSMg01no120_a16.b1 PHD_FILE: MSMg01no120_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:21 2005CHROMAT_FILE: MSMg01no120_a16.g1 PHD_FILE: MSMg01no120_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACACTCCTATTCGAAGAGGACCGCGGATTCTTAATTTCT
TGCCTCTCGAATTTGTATCTTTTTTACAGACTTTTCCTGAGAATGATAGG
GAAGGTACAATCCGTAGCCTCCTACCTGGAAAGTTAGTCTATCAGTGAGG
TATACTTCTAGACTTGACCATCACTGAATATATTCTTTAGGAGACAAAGC
CTCACTGTGTACACTAAGCCTATGTCCAGCTCATAGAGATCTGCCTGCAC
CTGCCTCCTGAGTACTGGGATTAATAATGTGGTGCTACTACTTCCAGTTT
TGAATGTCATAGACTTAACTCAATTATGGATAAGTTCTATCTAATACAAC
TCAGTACTGACTTGGAGTATTCATTGTTAGATTATGGACATGAGTCCTTC
CCACAAATGGGAGACAGAGAAAGTGAGGAGGACAATTACAAATAAGTGAT
GAGTCCAAATACGTGTGACATGAAAAATGAATTATAAAACTTGCTGCCTC
TAGATATCATGTACTATAGTGAAAACCACCTGTGTTAGGACACATCCTTA
CACAGCGTCAGTATCACTTGGACTGGATTCTCCCCACAGTTTTAGTCATC
AATCAACTTGCTTAGTTGACATGTCTACTTTACTGTCTAGAGAACATTTG
AAATGTATTTTACAAGACGAAGTGCTTGGATTTTCTTTT
GGCGGCCGCCTGTCAAACAACTTGAGGTGACCTATAGATTACCCGCGGAA
TTCTCTGTTTAGCTCTGTACCCCATTTTTTAATAGGGTTATTTGGTTTTC
TGGAGTCCAACTTCTTGAGTTCTTTATATATATTGGATATTAGCCCCCTG
TAAGATTTAGAACTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCTTTT
GGTCTTATTGACAGTGTCCTTTGAATATGGCGATTTTTTAAGCACACACA
TTTTTGCCATGATGTAAAACCGTAGCAACTCTAGGATCACAAAACTTGTA
TAGACTATGACAATCCAAGACCTCGTGCACACTGGCCATATAAATCTAAA
TGCTGACAGATTTTCTCTTATTCTTAAAATTCCAAAGGAATCTTTGAGTT
TCCTTTGATTTGTCTTGATCTTATCTGATTCCAGATATATGTGTATCAAG
CACCTGTGTGACAAAGGAAAAATTAAGCGTGATATCCACCATGAAAAAAC
TCATTCAAATGGAGGAATGCTGGCATCCATAGTGAGGAAAATTCAAGCAG
TACATTAGATGGTTAAGGGGCAACCGAGCAGTTATGATCATTCCTAGGAC
CCACAGAAGCCAGAGCTGCCATGCTACGTTTACAAGGACGAAATCCGCAA
GTGAAAAAAACGGACATGAGCAGTTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_a16.g1 MSMg01no120_a16.g1 CHROMAT_FILE:
MSMg01no120_a16.g1 PHD_FILE: MSMg01no120_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:21 2005
         (405 letters)



>mm_chr5_32810077_32810881
          Length = 805

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtttagctctgtaccccattttttaatagggttatttggttttctggagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtttagctctgtaccccattttttaatagggttatttggttttctggagtc 264

                                                                       
Query: 65  caacttcttgagttctttatatatattggatattagccccctgtaagatttagaactggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caacttcttgagttctttatatatattggatattagccccctgtaagatttagaactggt 324

                                                                       
Query: 125 aaagatcttttcccaatctgttggttgccttttggtcttattgacagtgtcctttgaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatcttttcccaatctgttggttgccttttggtcttattgacagtgtcctttgaata 384

                                                                       
Query: 185 tggcgattttttaagcacacacatttttgccatgatgtaaaaccgtagcaactctaggat 244
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 tggcgattttttaagcacaaacatttttgccatgatgtaaaactgtagcaactctaggat 444

                                                                       
Query: 245 cacaaaacttgtatagactatgacaatccaagacctcgtgcacactggccatataaatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacaaaacttgtatagactatgacaatccaagacctcgtgcacactggccatataaatct 504

                                                                       
Query: 305 aaatgctgacagattttctcttattcttaaaattccaaaggaatctttgagtttcctttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgctgacagattttctcttattcttaaaattccaaaggaatctttgagtttcctttg 564

                                 
Query: 365 atttgtcttgatcttatctgat 386
           ||||||||||||||||||||||
Sbjct: 565 atttgtcttgatcttatctgat 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)