BAC Information

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BAC

Clone NameMSMg01-120A18
Chromosome5 (Build37)
Map Location 138,539,749 - 138,627,351
singlet/doubletdoublet
Overlap geneZkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik
Upstream geneSerpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c
Downstream geneBC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120A18.T7 (MSMg01no120_a18.b1)MSMg01-120A18.TJ (MSMg01no120_a18.g1)
ACCAG330512AG330513
length774766
length of high quality
(start - end)
472 (124 - 595)329 (131 - 459)
definitionCHROMAT_FILE: MSMg01no120_a18.b1 PHD_FILE: MSMg01no120_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:22 2005CHROMAT_FILE: MSMg01no120_a18.g1 PHD_FILE: MSMg01no120_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,626,925 - 138,627,351)(138,539,749 - 138,540,077)
sequence
TTATAATTCCATATGTTTTTATAAACACCCTCAGCCCGCCCCTCCTCCAT
CTTTTACACTATAATTGCGGCCGCTATACGACTCCTATTTCGAGAGGAGC
CGCGGAATTCCAGACGATCCCGAGACCCAATTGTAGAAGGGTTGTTTAAC
ATGTGGAAGGTCTTAGATTTAATCTAGAGTGATTTTATATATATACATAT
TATATCACTATTATTAAGAAGAAGAAGAAAACATAGCAAACAGGTAAAGC
CAGGCATGGTGGTATGTGCTTGTAATCCCAGTACTTGGGAGGTAGAGGCC
AAAGGACCAGTGTTGTCTACCTAGTGAATTTGAAGCCAGTGGGGCTATAG
GAGACCTGCCCCTAAAGAGAGGTGGGTGGTTTCAGGTAGTCAGCCAAACA
CGTTTAGGAAGAACACAACAAAAGCTATAAAGGCAAGTACATGTCTTTCA
GATTTAAAGGACAGCAAGGAGAATGATGTCAGGGTAAAGTGGGAGGGGGC
GGGGCAGGTGATCAGAGATATGAGAGAAAAGAAAGAAACCATCTTAGACA
GGAACTTATTGCATAGTCAGGATGGCCTCAAACTTGCTGTCCCCACTTTA
GCCTCCAGGGTACTGGTAATACGGCTGTACAGGATGTATACTCTGATGCA
TAGCCTGACATGAAACCCAAGGCTGTCCCCTGAAACTAGAAGTGTTATCC
CCTACACCTGGACAGGAGGAAAGGGCAGCCCTTTATAGGAAAGAAATAGT
TACCCAGATTATATTTTGACAGAC
TTTTAATTTTAATATTTTTTTCCCCCCTTTTCTTACTTAACTNCTTTTTT
TTNTACGATGATATGGGTAGCCTGGCGGCGCCTGTTCGAAACAGGAGGTG
AACTATAGAATTTCCGCGGAATTCGAAGAATTGAGCAGCTCTTTCTTCTC
TGCAGTTGGTTCAGTGATTATGATAATCCCATCCATAAGTCACAGATTAG
CTATAACCAGTTCCTCTAGTCACAGCGTTCAGGAGCCTACTGACCGAGAT
GGAGCAGACCCTCTTGGAGTCTGCACTTAAAAGCAAAATGCAGGGCCAGT
GAAATGGTTCAGTAGGTATAGACACTTGCTGCCAAGCATAGCAACCAGTT
TGTCCCCAGTATTGAAAGGATGTAGTCAAGTCTCAAGGGTTGTATTCTAG
CCTCCATACATGCATCATGGTACAAACATGCACACACATATACACACACA
CACACACACACTCACACACACATACACTCACACTAAATACTATAAAAATG
AATAAATGTTTCAAGATTTTGTTAGGGTTGTAAGAGATGGCTCAGTCCCA
GCTCTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAACCTGG
AGGTCTACAGGGTGAGTTCCCGGACCGCCAGAGTTACACAGAGATAATCT
GTCTTGAACCCCCACCCTATTCCCATCTCCCCAAAAAGAGATGGCTCAGT
ATTGAAGTAGTACTAGACCACTGAAAGGTCTTCCAATGGAACTGTGTCAT
ATTCCCATCACCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_a18.b1 MSMg01no120_a18.b1 CHROMAT_FILE:
MSMg01no120_a18.b1 PHD_FILE: MSMg01no120_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:22 2005
         (472 letters)



>mm_chr5_138626480_138627351
          Length = 872

 Score =  772 bits (399), Expect = 0.0
 Identities = 420/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 46  ttaatctagagtgattttatatatatacatattatatcactattattaagaagaagaaga 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ttaatctagagtgattttatatatatacatattatatcactattattaagaagaagaaga 813

                                                                       
Query: 106 aaacatagcaaacaggtaaagccaggcatggtggtatgtgcttgtaatcccagtacttgg 165
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 812 aaacatagcaaacaggtaaagccaggcatggtggtatgtgcttgcaatcccagtacttgg 753

                                                                       
Query: 166 gaggtagaggccaaaggaccagtgttgtctacctagtgaatttgaagccagtggggctat 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gaggtagaggccaaaggaccagtgttgtctacctagtgaatttgaagccagtggggctat 693

                                                                       
Query: 226 aggagacctgcccctaaagagaggtgggtggtttcaggtagtcagccaaacacgtttagg 285
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 692 aggagacctgcccctaaagagaggtgggtggggtcaggtagtcagccaaacacgtttagg 633

                                                                       
Query: 286 aagaacacaacaaaagctataaaggcaagtacatgtctttcagatttaaaggacagcaag 345
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 632 aagaacacaacaaaagctataaagccaagtacatgtctgtcagatttaaaggacagcaag 573

                                                                       
Query: 346 gagaatgatgtcagggtaaagtgggagggggcggggcaggtgatcagagatatgagagaa 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagaatgatgtcagggtaaagtgggagggggcggggcaggtgatcagagatatgagagaa 513

                                                                       
Query: 406 aagaaagaaaccatcttagacaggaacttattgcatagtcaggatggcctcaaacttgct 465
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 512 aagaaagaaaccatcttagacaggaacttattgcagagtcgggatggcctcaaacttgct 453

                  
Query: 466 gtcccca 472
           |||||||
Sbjct: 452 gtcccca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no120_a18.g1 MSMg01no120_a18.g1 CHROMAT_FILE:
MSMg01no120_a18.g1 PHD_FILE: MSMg01no120_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:22 2005
         (329 letters)



>mm_chr5_138539549_138540277
          Length = 729

 Score =  574 bits (297), Expect = e-168
 Identities = 321/329 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagcagctctttcttctctgcagttggttcagtgattatgataatcccatccataagt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagcagctttttcttctctgcagttggttcagtgattatgataatcccatccataagt 260

                                                                       
Query: 61  cacagattagctataaccagttcctctagtcacagcgttcaggagcctactgaccgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cacagattagctataaccagttcctctagtcacagcgttcaggagcctactgaacgagat 320

                                                                       
Query: 121 ggagcagaccctcttggagtctgcacttaaaagcaaaatgcagggccagtgaaatggttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ggagcagaccctcttggagtctgcacttaaaagcaaaatgcagggccagtgagatggttc 380

                                                                       
Query: 181 agtaggtatagacacttgctgccaagcatagcaaccagtttgtccccagtattgaaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaggtatagacacttgctgccaagcatagcaaccagtttgtccccagtattgaaagga 440

                                                                       
Query: 241 tgtagtcaagtctcaagggttgtattctagcctccatacatgcatcatggtacaaacatg 300
            | ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 441 gggagtcaagtctcaagggttgtattctagcctccacacatgcatcatggtaaaaacatg 500

                                        
Query: 301 cacacacatatacacacacacacacacac 329
           |||||||||| ||||||||||||||||||
Sbjct: 501 cacacacatacacacacacacacacacac 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)