Query= MSMg01no120_e06.b1 MSMg01no120_e06.b1 CHROMAT_FILE:
MSMg01no120_e06.b1 PHD_FILE: MSMg01no120_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:38 2005
(603 letters)
>mm_chr5_86737743_86738745
Length = 1003
Score = 1067 bits (552), Expect = 0.0
Identities = 587/602 (97%), Gaps = 8/602 (1%)
Strand = Plus / Plus
Query: 5 gaattctctatg-tttcctaagggttgctggttgtacattgctgaggcagcggttgtagc 63
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattctctatggtttc-taagggttgctggttgtacattgctgaggcagcggttgtagc 257
Query: 64 tagagcaggtctgactaggacgtagatggttctgtacaagaggctatcctcaggctgttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagagcaggtctgactaggacgtagatggttctgtacaagaggctatcctcaggctgttt 317
Query: 124 ccgcatctgagaactgacaaggctggacttagtggtataagcctgtatccccattattta 183
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 cctcatctgagaactgacaaggctggacttagtggtataagcctgtatcctcattattta 377
Query: 184 aaat------ttaatctgaggccattctggtctacacagtggattccaagctagtcggga 237
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaatggattattaatctgaggccattctggtctacacagtggattccaagctagtcggga 437
Query: 238 ttaaaacgagatcccatgttaacaaaacaaaacaaaataaatacatttacatagaaaaaa 297
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 438 ttaaaatgagatcctatgttaacaaaacaaaacaaaataaatacatttacgtagaaacaa 497
Query: 298 ataacagaggatctgttgttaaactgtttcatttcccagaactacttacctccatatgtg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ataacagaggatctgttgttaaactgtttcatttcccagaactacttacctccatatgtg 557
Query: 358 agagatccccatcctgtaacatatgcgacagaaccagggatgatattttgggttgctgct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agagatccccatcctgtaacatatgcgacagaaccagggatgatattttgggttgctgct 617
Query: 418 gggagacataccctatggatatttctggaaaaggcgacagatctgtcaagttgtacaact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gggagacataccctatggatatttctggaaaaggcgacagatctgtcaagttgtacaact 677
Query: 478 gcgatgtcattgtcacgagttacggagctgtacccatcgtgggctaaaatagcccttact 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 678 gcgatgtcattgtcacgagttacggagctgtacccgtcgtgggctaaaatagcccttact 737
Query: 538 ctcactctcagcctagggctcattgtagaaaccccaaaggtggctgtccaatattgagga 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctcactctcagcctagggctcattgtagaaaccccaaaggtggctgtccaatattgagga 797
Query: 598 tt 599
||
Sbjct: 798 tt 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_e06.g1 MSMg01no120_e06.g1 CHROMAT_FILE:
MSMg01no120_e06.g1 PHD_FILE: MSMg01no120_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:39 2005
(244 letters)
>mm_chr5_86897482_86898125
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 aaactggatttaagattgaagggtttctggaattttcacagtgggatggagtaagtataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaactggatttaagattgaagggtttctggaattttcacagtgggatggagtaagtataa 385
Query: 61 tctctgtttaaaatcagtgtttttattcaactcggaatcagcattatctcatgtttccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctctgtttaaaatcagtgtttttattcaactcggaatcagcattatctcatgtttccaa 325
Query: 121 gttcaatagtggataattgggactgcagtggaaaagttaataccactttgtcctgcttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttcaatagtggataattgggactgcagtggaaaagttaataccactttgtcctgcttga 265
Query: 181 ttcagatctaagaggaaaatggtcatttgtgtgaaagcaattctcattgctccaacctaa 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 ttcagatctaagaggaaaatggtcatttgtgtgaaagcaatcctcattgctccaacctaa 205
Query: 241 catt 244
||||
Sbjct: 204 catt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
