BAC Information

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BAC

Clone NameMSMg01-120I23
Chromosome5 (Build37)
Map Location 33,536,813 - 33,537,058
singlet/doubletsinglet
Overlap genenone
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
Downstream geneSpon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120I23.T7 (MSMg01no120_i23.b1)MSMg01-120I23.TJ (MSMg01no120_i23.g1)
ACCAG330898AG330899
length696696
length of high quality
(start - end)
469 (78 - 546)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no120_i23.b1 PHD_FILE: MSMg01no120_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:02 2005CHROMAT_FILE: MSMg01no120_i23.g1 PHD_FILE: MSMg01no120_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATGCGCG
GAATTCCTCCGCATTTCCCGCAAAAGGTGGGAAACAGGGAGAAGGAGTGA
CCGGCTCTTGTAGTACAAGGCCAATTGGCTTTTTTATTTGGGTGGGAGGC
AGTGAAGGGCTTGCCCTTTCAATAGTACGTCTCCAATCTCTCTCCCCCCT
ATTAAGTTAAATAAGGCAACGCTTAACTGAGGTGATCAAATGATTTTCTC
ATCCGTAGATGAGTGGGCTTTTAACCTTGGCTTGGGTGGACATGGACCCG
ATTCCTCCCGTGGGTAAAACCCATTCATGTGGCTCTTGGTACCTTTTGGG
GAGGCGAGGTAGAGCCGGAGAATACTTTTTATTTTTAACCAAAATATGAT
ACCAACCTCTTTTAAACCGGGTTTATCTCACAGGAAACTCAGAAACGGTC
AAGCTGGACCTTCCCTTGCAGTACTTCTGCACCAAGCGGCGCCCATACTG
AATTTGTACAATCACAAACCAGTATGCACAGTTCTGAGTGCTGTGCAGCT
CCCAAAGGAGAATTATCAACCTCACAATTAGCAAAGCCTAATCAAGAATT
ATGTCGCTAATAACACCACGATTTGTGGGTAAAACAGGAGCTGGAAGTCG
TTTCTCCTCATCCCTGTCTTTTCCCAGCCTATTGAGCTAACGACAC
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTACTCCACAGACCTGACATTTCAGGA
AATTTCTCTCCATTTGGAGTGACAGCCATAGCTTCAATGTTTTTTGTGAT
CTCAGAGCCCTTAAGAGCCCTATTAAGTCAAGTGTGGTGAGAGGCGGAGG
CAGGGAGATCCCTGTGAGTTTAAGACTAATCTGATCTACAGAGCAAATCC
TAGGTAAGATAAACCTACATAGTGAGACCTTATGTCAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGTTTCTTAGACAGAGACAGAGACAGAGAGAC
AGAGAGACAGAGAGAGAGATCCTATCATTACCCAGCAGTGCCCCGTTCCT
GGCTGGGACAATGTGTTCAGAGCAGTTTATTCTGTCACCAGCCTTGACAT
TTGTTTATTCTTCTGGCATGTGACTGACCGTCCGGCTGAGTAGGATAAGC
AGCCGTAGCAGCACCAGTCTTGGACCCCGGAAACCCTCACATTCTGCGCT
TACTCTCCACTTCCAATAGTCCTGCCCCTCTGCGAAGAGGGAACTATGGC
TCTGATGTTACGTGACTCCCATCTCTGCCAACCATGTCCACTCTGAGATT
GTATATCTGGCAGGCTTAACGCTCCGTTGCCCGGTTCTCCCTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_i23.g1 MSMg01no120_i23.g1 CHROMAT_FILE:
MSMg01no120_i23.g1 PHD_FILE: MSMg01no120_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:02 2005
         (246 letters)



>mm_chr5_33536744_33537389
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactccacagacctgacatttcaggaaatttctctccatttggagtgacagccatagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 315 ttactccacagacctgacatttcaggaaatttctctccatttggagtgacagccatagcg 256

                                                                       
Query: 61  tcaatgttttttgtgatctcagagcccttaagagccctattaagtcaagtgtggtgagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcaatgttttttgtgatctcagagcccttaagagccctattaagtcaagtgtggtgagag 196

                                                                       
Query: 121 gcggaggcagggagatccctgtgagtttaagactaatctgatctacagagcaaatcctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gcggaggcagggagatccctgtgagtttaagactaatctgatctacagagcaaatcctag 136

                                                                       
Query: 181 gtaagataaacctacatagtgagaccttatgtcagagagagagagagagagagagagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gtaagataaacctacatagtgagaccttatgtcagagagagagagagagagagagagaga 76

                 
Query: 241 gagaga 246
           ||||||
Sbjct: 75  gagaga 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)