BAC Information

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BAC

Clone NameMSMg01-120M02
Chromosome5 (Build37)
Map Location 71,494,515 - 71,495,052
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120M02.T7 (MSMg01no120_m02.b1)MSMg01-120M02.TJ (MSMg01no120_m02.g1)
ACCAG331043AG331044
length686687
length of high quality
(start - end)
476 (59 - 534)539 (54 - 592)
definitionCHROMAT_FILE: MSMg01no120_m02.b1 PHD_FILE: MSMg01no120_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:18 2005CHROMAT_FILE: MSMg01no120_m02.g1 PHD_FILE: MSMg01no120_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATTTCGAGAGGTCCGCGGAATTCCTCTATGC
TCGCGCGCTAGCTTTCTAGGAAAGGGTCTTTCCTTCCCTGATGTCCCACA
AGGCCATCCTCTGCTACTATGTAGCTCGAGCCATGAGTCCCCCATGTGTA
CCTTGATTGGTGGTTTAGTCCCTAGGAGATCTGGGGATACTGGTTGGTTC
ATATTGTTTTTCCTCCTATGGGGTTGCAAACCCCTTCAGCTCCTTCAGTT
CTTTCTTTAGCTCCTCCATTCAAACCCTGTACTCAGACCAATGGTTGGCT
GAGAGCATCCACCTCTGTATTTGTCATTCTCTGGCAGAGCCTCTCAGGAG
ACAGCTATATCATGCTCCTGTCAGTAAGCATGTATTGGAATTCACAATCG
TGTCTTGGTTTGGTAACTATATATGGGATGGATCCCCAGGTGGAGCAGTC
TCTGGATGGTCTTTTCTTCAGTCTCTGCTCCACACTTTGTCTGTCTCCTC
CCATGGACAGAGAATTTTGTTCCCCCTTCTAAGAAGGACCAAAGTATCCA
CACTTCGTTCCTTCTTCTTGAGTTTCATGTGGTCTGTGAATTGTATCTTA
AGAATTCCAACTTCTGGGCTAATATCCACTTATCAGTGAGTGCATACCAC
GTGTGTTCTTTTGTGACTGGGTTACCTCACTCAGGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATGTGTCCATGCAGTAGACACATAAATTCTTTTTTCTTATATACCTT
ATCTGCATGCCTCCATAGCACACTGCACTTCCCATGTCAAAGACAAGTAC
TCGCACACGTGTAGACTCATGCTATATATGAATTTCAGTGAGGAAGGGTG
AGGGGAAAGAGTCACTAGAGAATGACAAAAAGAAGGAAATGTAGAGGAGC
TGGAAAAAAAATCCAAAAGAGAGCATGGTATACTAGGAGAGGAGCAGGAG
AAAAATGTAGAAAAAAAATGGATGAGAAAAACACTAGAGACACAAGGAAG
AAAAAAATGTATGGATGTGTGCTGGGTTCTGATGGAGTATTCTGTAAAAT
TTGAAGCTTCACTGTGGGCAAGACAGCATGGACGCTCACATACTCATGAG
AAAAACAGAATCAAAAGATTTGGTGTAGTCAAGGGCTGTGAGTAAAACTG
AATTCCATCTTCTAAATGTAGAGACAAGGCTCTAACAGCTTTCAAATACT
TCTGTAGTAACACCAAAAAAACCTGTGTACTTTTGCCTACTAGCTGGTTA
TATTCTGTGCACTTATATAAACCCACAGAGTCCTCATGACAACCAAATGA
AATAGGATCTGCCACTACTTTTATTCTTTGTGAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_m02.g1 MSMg01no120_m02.g1 CHROMAT_FILE:
MSMg01no120_m02.g1 PHD_FILE: MSMg01no120_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:18 2005
         (539 letters)



>mm_chr5_71494315_71495252
          Length = 938

 Score = 1027 bits (531), Expect = 0.0
 Identities = 537/539 (99%), Gaps = 1/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgtccatgcagtagacacataaattcttttttcttatataccttatctgcatgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atgtgtccatgcagtagacacataaattcttttttcttatataccttatctgcatgcctc 679

                                                                       
Query: 61  catagcacactgcacttcccatgtcaaagacaagtactcgcacacgtgtagactcatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 catagcacactgcacttcccatgtcaaagacaagtactcgcacacgtgtagactcatgct 619

                                                                       
Query: 121 atatatgaatttcagtgaggaagggtgaggggaaagagtcactagagaatgacaaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atatatgaatttcagtgaggaagggtgaggggaaagagtcactagagaatgacaaaaaga 559

                                                                       
Query: 181 aggaaatgtagaggagctggaaaaaaaatccaaaagagagcatggtatactaggagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggaaatgtagaggagctggaaaaaaaatccaaaagagagcatggtatactaggagagga 499

                                                                       
Query: 241 gcaggagaaaaatgtagaaaaaaaatggatgagaaaaacactagagacacaaggaagaaa 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcaggagaaaaatgtag-aaaaaaatggatgagaaaaacactagagacacaaggaagaaa 440

                                                                       
Query: 301 aaaatgtatggatgtgtgctgggttctgatggagtattctgtaaaatttgaagcttcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaatgtatggatgtgtgctgggttctgatggagtattctgtaaaatttgaagcttcact 380

                                                                       
Query: 361 gtgggcaagacagcatggacgctcacatactcatgagaaaaacagaatcaaaagatttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgggcaagacagcatggacgctcacatactcatgagaaaaacagaatcaaaagatttgg 320

                                                                       
Query: 421 tgtagtcaagggctgtgagtaaaactgaattccatcttctaaatgtagagacaaggctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtagtcaagggctgtgagtaaaactgaattccatcttctaaatgtagagacaaggctct 260

                                                                      
Query: 481 aacagctttcaaatacttctgtagtaacaccaaaaaaacctgtgtacttttgcctacta 539
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 259 aacagctttcaaatacttctgtagtaacaccaaaaaaaactgtgtacttttgcctacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space:   490912
Effective search space used:   490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)