BAC Information

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BAC

Clone NameMSMg01-120O08
Chromosome5 (Build37)
Map Location 107,396,928 - 107,535,406
singlet/doubletdoublet
Overlap geneCdc7
Upstream geneLOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1
Downstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120O08.T7 (MSMg01no120_o08.b1)MSMg01-120O08.TJ (MSMg01no120_o08.g1)
ACCAG331147AG331148
length701690
length of high quality
(start - end)
573 (56 - 628)525 (56 - 580)
definitionCHROMAT_FILE: MSMg01no120_o08.b1 PHD_FILE: MSMg01no120_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:29 2005CHROMAT_FILE: MSMg01no120_o08.g1 PHD_FILE: MSMg01no120_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,534,834 - 107,535,406)(107,396,928 - 107,397,452)
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCACTCCA
TGTCCTTTGAGAGTCAAAGGGAGAAGTCATGTGCATTTAGACTCCACCCC
TTTCATCTCCCCAAATGTCAATGCAACTTCCACCGTGCACTGTCCCTGTC
TGCCACTAGTTCCTTCTGGTTGCCCAAGGCAGAAAGTAGAATATGGTTGG
AGTCTCCTTGACGCCGCACCCCGGTTTACAAAGCCCAGGTTTCATTCATT
ATCGACAATATCATTTTCAAATGATGAGTTTATTCCTTCTACCTGAGAGC
CTTCCTGGCTTTAATTTTTCACCACACAGCAAAACTCCTAAACACATGCA
AACCATGTTACAGCACCACTTGAGCCTTTTAAGCAATTTCCGTTTGCCTC
ACTTTCTTCCTAGACCCACAGAAGTTACCAAAGTAGAGCAGCTGCCATAG
AAGATAAATCCACAGTCGCTTTCTCGGGTCCTCCAGTCACGTCCCTGGAG
GACCTGGTATCCATGATCTTAGTTCAAACTCAAAGTCATTGATATGTTTT
CATAAATAGGGATTTTGTGGTATTGAATAGAAATAACACAACAAAGCCAA
CAACTAGTCATGTGGTACAGCACAGTCCCACCCCCACCCACCCCAATAAT
AGCAACTTCTTGTACTTGGAGGCTGTACACTATTCCCTGTAGTGAATTAA
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATTGCTTAATACCTGAAGATTCTTCTGTGGTTCTTGAATCAGTA
GTTTATTAGATTTTATGTTACTGCCTCCACTTATTTAAGCTATGCATACT
TTTATATTTATTTAGAATTAGTGGCTTTTCTGGGGTTTGAGATAGAGTAT
GCTGTTAACTTTGGGACTATATTAAATGACTTTTCCCCACAATTTAGAGA
ACCTTAGAAGACTTGTTCTGAGGATAGACTGACCATTCTGTGTGTAAAAC
TTTCCCAGCCTGTGGGATTTCTGTCTCTGCTAAAGGGAGTTGATTTCAGG
ATTATCGCACGGTGCCCTGAGTATGCCATCTAGTGCTCACAGCACCACCT
GTCTCACCCAGCTTTAGTCCTTTTTGCTTTAATCTTAGCATTTTCATCTT
AAAGGCCAGATATATACTGACTGTATCTTAGTGTGTACCTTTAGTACAGT
ACACAGTTTCCATGTTTAATTTTTCTGGCTTTTTATTTTTCCTGCTAGTT
AAAATTTTGTGACTAGCAATTTCTTAGCAATTCTTGGTTTTTGATTGTTT
GTTTGTTTGGTTGTTTTGTTTTTTCTTGAGACAGGGTTTCTCTGTATAGC
CCTGGCTATCCTGGTGCTCACTTTATAGACCAGGCTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_o08.b1 MSMg01no120_o08.b1 CHROMAT_FILE:
MSMg01no120_o08.b1 PHD_FILE: MSMg01no120_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:29 2005
         (573 letters)



>mm_chr5_107534634_107535606
          Length = 973

 Score = 1007 bits (521), Expect = 0.0
 Identities = 560/573 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgagagtcaaagggagaagtcatgtgcatttagactccacccctttcatctccccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttgagagtcaaagggagaagtcatgtgcatttagactccacccctttcatctccccaaa 714

                                                                       
Query: 61  tgtcaatgcaacttccaccgtgcactgtccctgtctgccactagttccttctggttgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgtcaatgcaacttccaccgtgcactgtccctgtctgccactagttccttctggttgccc 654

                                                                       
Query: 121 aaggcagaaagtagaatatggttggagtctccttgacgccgcaccccggtttacaaagcc 180
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 653 aaggcagaaagtagaatatggttggagtctccttgactccacaccccggtttacaaagcc 594

                                                                       
Query: 181 caggtttcattcattatcgacaatatcattttcaaatgatgagtttattccttctacctg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caggtttcattcattattgacaatatcattttcaaatgatgagtttattccttctacctg 534

                                                                       
Query: 241 agagccttcctggctttaatttttcaccacacagcaaaactcctaaacacatgcaaacca 300
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 533 agagccttcttggctttaatttttcactacacagcaaaactcctaaacacatgcaaacca 474

                                                                       
Query: 301 tgttacagcaccacttgagccttttaagcaatttccgtttgcctcactttcttcctagac 360
           ||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 473 tgtcactgcaccacttgagccttttaagcaatttctgtttgcctcactttcttcctagac 414

                                                                       
Query: 361 ccacagaagttaccaaagtagagcagctgccatagaagataaatccacagtcgctttctc 420
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 413 ccacagaagttaccaaagtagagcagctgccatagaagataaatctgcagtcgctttctc 354

                                                                       
Query: 421 gggtcctccagtcacgtccctggaggacctggtatccatgatcttagttcaaactcaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gggtcctccagtcacgtccctggaggacctggtatccatgatcttagttcaaactcaaag 294

                                                                       
Query: 481 tcattgatatgttttcataaatagggattttgtggtattgaatagaaataacacaacaaa 540
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 293 tcattgatatgttttcataaatagggattttgtggtgttgaatagaaacaacacaacaaa 234

                                            
Query: 541 gccaacaactagtcatgtggtacagcacagtcc 573
           ||| |||||||||||||||||||||||||||||
Sbjct: 233 gccgacaactagtcatgtggtacagcacagtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no120_o08.g1 MSMg01no120_o08.g1 CHROMAT_FILE:
MSMg01no120_o08.g1 PHD_FILE: MSMg01no120_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:29 2005
         (525 letters)



>mm_chr5_107396728_107397652
          Length = 925

 Score =  969 bits (501), Expect = 0.0
 Identities = 519/525 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgcttaatacctgaagattcttctgtggttcttgaatcagtagtttattagatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgcttaatacctgaagattcttctgtggttcttgaatcagtagtttattagatttta 260

                                                                       
Query: 61  tgttactgcctccacttatttaagctatgcatacttttatatttatttagaattagtggc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgttactgcctccacttattttagctatgcatacttttatatttatttagaattagtggt 320

                                                                       
Query: 121 ttttctggggtttgagatagagtatgctgttaactttgggactatattaaatgacttttc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttttctggggtttgagatagagtatgctgttaactttgggaatatattaaatgacttttc 380

                                                                       
Query: 181 cccacaatttagagaaccttagaagacttgttctgaggatagactgaccattctgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacaatttagagaaccttagaagacttgttctgaggatagactgaccattctgtgtgt 440

                                                                       
Query: 241 aaaactttcccagcctgtgggatttctgtctctgctaaagggagttgatttcaggattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaactttcccagcctgtgggatttctgtctctgctaaagggagttgatttcaggattat 500

                                                                       
Query: 301 cgcacggtgccctgagtatgccatctagtgctcacagcaccacctgtctcacccagcttt 360
           || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 cgaacggtgccctgagtatgccatctagtgatcacagcaccacctgtctcacccagcttt 560

                                                                       
Query: 361 agtcctttttgctttaatcttagcattttcatcttaaaggccagatatatactgactgta 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcctttttgctttaaacttagcattttcatcttaaaggccagatatatactgactgta 620

                                                                       
Query: 421 tcttagtgtgtacctttagtacagtacacagtttccatgtttaatttttctggcttttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttagtgtgtacctttagtacagtacacagtttccatgtttaatttttctggcttttta 680

                                                        
Query: 481 tttttcctgctagttaaaattttgtgactagcaatttcttagcaa 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttcctgctagttaaaattttgtgactagcaatttcttagcaa 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)