Query= MSMg01no120_p19.b1 MSMg01no120_p19.b1 CHROMAT_FILE:
MSMg01no120_p19.b1 PHD_FILE: MSMg01no120_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:37 2005
(660 letters)
>mm_chr5_92875545_92876604
Length = 1060
Score = 1156 bits (598), Expect = 0.0
Identities = 631/642 (98%)
Strand = Plus / Minus
Query: 19 ccttgttacctccacaactcagttgagcaatttttgttgagcccagtgaccaccacgtgg 78
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 889 ccttgttacctccacaactcagttgagcaatttttgttgagcccagtgaccatcacgtgg 830
Query: 79 actcaggagagaattgatactgtctagataccacttttgtagtgtttcagccattcattt 138
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 829 actcaggagagaattgatactgtttagataccacttttgtagtgtttcagccattcattt 770
Query: 139 actcagccagtattaagcacctgctgtgtactgagtactctcccaggtgcggaggtggct 198
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 769 actcagccagtattaagcacctgctgtgtactgagtactctcccaggtgcgaaggtggct 710
Query: 199 gagctgtcttgctttcagggaactgacagttactgaacacaaacaggtaaactgttatgc 258
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 709 gagctgtcttgctttcagggaactgacagttactgaacacaaacaagtaaactgttatgc 650
Query: 259 tggtttcaaggacaaggaacgaggttctagagatagcaacagaagctcctctatcaggcc 318
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 649 tggtttcaaggacaaggaacgaggttctagagatagcaacaaaagctcctctatcaggcc 590
Query: 319 tgaggtagccagagacaattctagaatgaagaaatgctaagatggatttggagcgaccca 378
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 589 tgaggtagccagagacaattctagaatgaagaaatgctaagatgaatttggagcgaccca 530
Query: 379 tctgacgccaggcagaggctcccacaccacttatttttgtgtcgatgcaacagaagcagc 438
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 529 tctgacgccaggcagaggctcccataccacttatttttgtgtcgatgcaacagaagcagc 470
Query: 439 ttaaaggagaaaggtttattatggctcgagatttcagaaggactccagtctgtcgtggca 498
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 469 ttaaaggagaaaggtttattatggctcgagatttcagaagggcttcagtctgtcgtggca 410
Query: 499 aggaggctatgttgatgggagtggttggcacaaggctggagtcacacctcagtggatcta 558
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 409 aggaggctatgttgatgggagtggttggcacaaggctggagtcacacctcactggatcta 350
Query: 559 gaggcagtgccacaagttggaggccaccttggtctacattgtgagttccaggctagccag 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaggcagtgccacaagttggaggccaccttggtctacattgtgagttccaggctagccag 290
Query: 619 gggtatggaatgagagcctatctcaatataaaatccaaacaa 660
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 289 gggtatagaatgagagcctatctcaatataaaatccaaacaa 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_p19.g1 MSMg01no120_p19.g1 CHROMAT_FILE:
MSMg01no120_p19.g1 PHD_FILE: MSMg01no120_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:37 2005
(573 letters)
>mm_chr5_92793237_92794212
Length = 976
Score = 998 bits (516), Expect = 0.0
Identities = 562/580 (96%), Gaps = 11/580 (1%)
Strand = Plus / Plus
Query: 1 attcctcttgagaactagatacaaaagagagagagagcgagagagag--agagcgagaga 58
|||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 201 attcttcttgagaactagatacaaaagagagagagagcgagagagagcaagag--agaga 258
Query: 59 g--agagcgagagagagagagagagagagagagagagtctctgctttggtctccagactt 116
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcaagag--agagagagagagagagagagagagagagtctctgctttggtctccagactt 316
Query: 117 gcccaagcttgaaaacaaggtatcattttgttgctttgaaaaattcgtataatgagagac 176
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 317 gcccaagcttgaaaacaaggtatcattttgttgctttgaaaaattcgtataacgagagac 376
Query: 177 ttcc-acactagaaaccattttggaaacaagaagacttgcagcgtgccacttgcttcgta 235
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttcccacactagaaaccattttggaaacaagaagacttgcagcgtgccacttgcttcgta 436
Query: 236 gcgctggccaatgttgtaaatccagaaaagaaaaaggctctttatgcattcagtactatt 295
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcgctggccaatgttggaaatccagaaaagaaaaaggctctttatgcattcagtactatt 496
Query: 296 ctcatgaggctgatggctggagcggagctggtaagcagcctcccggtgtccctgagaacc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcatgaggctgatggctggagcggagctggtaagcagcctcccggtgtccctgagaacc 556
Query: 356 cctccggagaatctaggaagcacgcaactagagaacaaatccctgcccc-cgaggaagag 414
|||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct: 557 cctccggagaatctaggaagcacgcagctagagaacaaatccttgcccctcgaggaagag 616
Query: 415 ccagccagcctgtcagtgtgtgcgatttgaatgaaaagcaggtaaggaaaaa-tcatcca 473
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 617 ccagccagcctgtcagtgtgtgcgatttgaatgaaaagcaggtaaggaaaaaatcatcca 676
Query: 474 caggaagggataacaagcctccaacaggtctttccattttgcctgcgggccctgaagtcc 533
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 677 caggaagggataacaagcctccaacaggtctttccatcttgcctgcgagccctgaagtcc 736
Query: 534 aaaaacatctggtggtcatcactggcacacatttctacct 573
||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaaacatctggtggtcatcactggcacacatttctacct 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 976
Length adjustment: 10
Effective length of query: 563
Effective length of database: 966
Effective search space: 543858
Effective search space used: 543858
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
