BAC Information

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BAC

Clone NameMSMg01-121F06
Chromosome5 (Build37)
Map Location 117,589,692 - 117,694,324
singlet/doubletdoublet
Overlap geneTaok3
Upstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3
Downstream genePebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F06.T7 (MSMg01no121_f06.b1)MSMg01-121F06.TJ (MSMg01no121_f06.g1)
ACCAG331469AG331470
length720695
length of high quality
(start - end)
316 (48 - 363)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no121_f06.b1 PHD_FILE: MSMg01no121_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:04 2005CHROMAT_FILE: MSMg01no121_f06.g1 PHD_FILE: MSMg01no121_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,694,014 - 117,694,324)(117,589,692 - 117,589,937)
sequence
CCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTTTTCAGGAGCCCCAGACAACCATGCCCCCCAACTGCAA
AAGTCCATAGCTCATGGCCTTCGCACACCTCATTCAGAGACACAACATAA
AGAACTATACTGAGAGCAGACAGTGTCCTACTATGGCCTCTGTTAGGCTT
GTGTGGAAAAGGTGGGTTTGTAAGACACATCAGAGAAGAGCTAACTGCTG
GTGCTAGTTAGCAGGCCAAGTCAGAAACCATTCTTGTCATTTATTGGGCT
CATAATGGAAAGGTGAGTTTGTGTGTTTCTTTCTTTCTGCTGATCACCTT
CAGATCGCTCTGTTATTTGTCCCCACCTCTCCCAGAAAGAAAACCACAGA
GAAAGGGTACAGCCAACCAGCAACCCAATGGTTGACACAGCAACCAGTCA
ATCTATTCTTGCCATCAACTGTCAGTCTGGCCGGTGGCTTGACTGCTGCT
GATTGGTTCCCCAGAGTCCCACGGCCCTGTACTTAATTTACTGCTATTTA
TGCCACCTTAGTCCTTTCCAATTGCAGTGTGACCCATTTTCTAAAATTAC
ACCCTTTCTTCCCTACATTCTAGTGTCTTGCCTTACACATTCCTTTGGCT
CTGGCGTTTGAATACTTTTTTCAGGTCAACCCCACTGAATCTTTTATATC
CCTCTTGACAATTCTCCTCC
AAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGAGAGCACAAAGCACTCGTTATG
GCTAAAGCTGTCTCTCCGGCCCCCATGTATACATTTTCATATGAGCATAT
GTTTTCAATTCTTTGGAGTATGTGCCTAGGAGTGCAATTGCTCATAATTA
TTTTTGTAAAGCAATAGAAATGAAAATTCCTTAAAAATCATCTCTCTTAA
TTATTCCACACACATACACAAAATATTGTTTATTTAGTTAGTTGGTCTCC
TGGATCTTTTCATCAGAAGCGAGATAGACACAGAACTTCAGCTTGAGTCC
TGGACAGATGGTCTTTAATTCTGACCGAACAGTCCCAGTTGTCCGCCACC
ATGAGGACACTGTGCAGAACGCATGCCTAAGCGTCCTCAAATTGCTAGTC
ACAAGGAATGAAGTTAAGCAGCGGCCGTGTCATGTACAGGGTAGATGCCA
TCAGGAAGTTGTCAGGGTACTTCTTTATACACGGTGGCCGCGGGATCTAT
CCAAAGTTTCAAAGGCTGGCTCAGCTTTTCCTCAGGTGTGGCACGACCTG
ATCAGTGCACCCCCCACTCCAGCCCAGAGGGTGAGACCCAAGCCTGGCAC
TTAGGCCACCTGCCGCAACCAAGCATTTTTGAACCCCCACAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f06.b1 MSMg01no121_f06.b1 CHROMAT_FILE:
MSMg01no121_f06.b1 PHD_FILE: MSMg01no121_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:04 2005
         (316 letters)



>mm_chr5_117693810_117694525
          Length = 716

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgttttcaggagccccagacaaccatgccccccaactgcaaaagtccatagc 64
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctctgttttaaggtgccccagacaaccatgccccccaactgcaaaagtccatagc 456

                                                                       
Query: 65  tcatggccttcgcacacctcattcagagacacaacataaagaactatactgagagcagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcatggccttcgcacacctcattcagagacacaacataaagaactatactgagagcagac 396

                                                                       
Query: 125 agtgtcctactatggcctctgttaggcttgtgtggaaaaggtgggtttgtaagacacatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agtgtcctactatggcctctgttaggcttgtgtggaaaaggtgggtttgtaagacacatc 336

                                                                       
Query: 185 agagaagagctaactgctggtgctagttagcaggccaagtcagaaaccattcttgtcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agagaagagctaactgctggtgctagttagcaggccaagtcagaaaccattcttgtcatt 276

                                                                       
Query: 245 tattgggctcataatggaaaggtgagtttgtgtgtttctttctttctgctgatcaccttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tattgggctcataatggaaaggtgagtttgtgtgtttctttctttctgctgatcaccttc 216

                      
Query: 305 agatcgctctg 315
           |||||||||||
Sbjct: 215 agatcgctctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no121_f06.g1 MSMg01no121_f06.g1 CHROMAT_FILE:
MSMg01no121_f06.g1 PHD_FILE: MSMg01no121_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:04 2005
         (246 letters)



>mm_chr5_117589492_117590137
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagagcacaaagcactcgttatggctaaagctgtctctccggcccccatgtatacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagagcacaaagcactcgttatggctaaagctgtctctccggcccccatgtatacatt 260

                                                                       
Query: 61  ttcatatgagcatatgttttcaattctttggagtatgtgcctaggagtgcaattgctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatatgagcatatgttttcaattctttggagtatgtgcctaggagtgcaattgctcat 320

                                                                       
Query: 121 aattatttttgtaaagcaatagaaatgaaaattccttaaaaatcatctctcttaattatt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattatttttgtaaagtaatagaaatgaaaattccttaaaaatcatctctcttaattatt 380

                                                                       
Query: 181 ccacacacatacacaaaatattgtttatttagttagttggtctcctggatcttttcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacacacatacacaaaatattgtttatttagttagttggtctcctggatcttttcatca 440

                 
Query: 241 gaagcg 246
           ||||||
Sbjct: 441 gaagcg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)