BAC Information

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BAC

Clone NameMSMg01-122F05
Chromosome5 (Build37)
Map Location 31,691,343 - 31,821,513
singlet/doubletdoublet
Overlap geneZfp512, 4930548H24Rik, Xab1, Supt7l
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneSlc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F05.T7 (MSMg01no122_f05.b1)MSMg01-122F05.TJ (MSMg01no122_f05.g1)
ACCAG332216AG332217
length1,1191,100
length of high quality
(start - end)		322 (126 - 447)678 (119 - 796)
definitionCHROMAT_FILE: MSMg01no122_f05.b1 PHD_FILE: MSMg01no122_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:39 2005CHROMAT_FILE: MSMg01no122_f05.g1 PHD_FILE: MSMg01no122_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(31,821,196 - 31,821,513)(31,691,343 - 31,692,020)
sequence
TATTATTNNNTATCATTGCGCGCTATAGACTCACTAAGGGAGAGGATCCG
CGGAATTCCATACACTATGTCTCCCTTAAAGTTAGTTTTTATAGACAGAA
ATGCAGTATTTTCCCTTAAATCTGCCTTTTTTGCCTTGTGTAACTTTTAA
TTAATGATGACAATTTCTGACATATTTTCTTTATGTGTCTATCATAAATG
CAGACCCAAACCCTTAAATGACTTCCTACCATTGGCAGTGGCATCTGTCC
TTGTTGTTTGATGGTGCTGGGATTGAACTCATGGCCTTGCACAGGATGGG
CATGCATTCTCGCACTGCACCCCAGCCCTGGCAGGAGAGGTTTTAAATCT
CACTTTCCAGGCTGGCTATTAGTAAAGTGCTTATCTTGAAAGCCCGGTAC
CCTGAGTTCAGATCTCCAGGGCCCATGTAAAAAGCCAGGTGTGTTGTTTT
ACACTTGCAAGGCCATCCATCGATGGTGAGATGAAAGGCAGACAGGCGGG
TTCCTGAAGCTCACTTTCTCAACTGAGAAGTGGAAGTACCTGAGGAATGA
CCACTGAGGTGACTCTTTGACCTCTGCACACACACAAACACATGCTTGTG
CACATATTCATGCACATGCACACACGTGCACACACACCATAAAGAAAGAA
CAACTCATTTGCTAACTCCTGCTCTGCCCAGTTTTCCTTGGGTTACTGTA
AGCTCACTCTCCAATCTAATTCTAAAATAGCTCTGGAAAACTAATTCTTG
CTTACCAACAGATTAGTAAGCAGCTCTTCTGAAGAATATGAAAGGATTGT
GAATCCCCCAGAAGGCCACATGAATACCCCAAACCTGTGAAGATTCATGA
AGAGCCTGTGAAGCGACATCCCATTTTCCTGTCCATTGAGGACCTATAAA
GCCTGACCTTGCTTTCTGGAAGATCAGTCCCTTAACCCATTTTGGGGTCC
TCGGGGCCTCCAAAAGGAATCTGCTTTCCCATTTCCACCCTGTAAGTTGG
GAAAGCTTTCCCCCACATGGGTCTTCCATGTTATCAAAAAAAACAGTTTG
GTATTTCTCTTTTTTGGCAATCNCTGGGACTCCTTGCCCACTTCTTTTAA
CAATCTTTCCTTGGAAAGT

NTTTTCATGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTTAAGCTGAGGAATACCGAATGGCTGAG
AAGCACCTGCCTTAATGTTCAACATCCTTAATCATCAGGGAAAAGCAAAT
CAAATCAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGAATGTGGTGAAAGAGGAACA
CTCCTTCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCCGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAA
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAATAAG
GACACATGCTCCACTATGTTCATAACAGCCTTATTTATAATAGCCAGAAG
CTTGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAACAAATTC
ATGAAATTCTTTCTAAACTACAACCCCCCTGTGAATCAAGAATCAGGAGA
CAAAGGTACAAAGGTTTCCAGACCAGGTAATTCATTTATAGAACGAGAGA
TATATAACCTTTTAATACTTGAAGATGATAAACACAATAAATATAGTTTT
GGCTTTATGTGATGATATTTTGAATGGTTTGGCAGGGGTGGATTTAGAGG
AAATAGACATCTTATCAGTTACTGGTATTGCAATATTTATTCTCTTGATT
TACTGTGTCCTCTCAAAAGACAGGGCCCTAGATAAAAAAAAATTCCTTGC
CCTTACAAAAGAGATTACAAGTAACCCTTGAACTAAAGCTTCCGGAATTT
ATTGGTCAAAATAAGCCAACAGAAAGAAGGAAAAAGGAAGGTTGGAAAAC
AAAAGTCTACAAGAAGATACTTAGAACCGAAAATTCTTATTATGAAAGTG
AATACCTAGAACATTAAGTTTCCCATAGCGCAAAAGAAAAATTTAAATTT
CTCAGGGTCCCAGTGGAACTCCATGGCGCACCTTGGCCTATAGTTTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f05.b1 MSMg01no122_f05.b1 CHROMAT_FILE:
MSMg01no122_f05.b1 PHD_FILE: MSMg01no122_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:39 2005
         (322 letters)



>mm_chr5_31821186_31821907
          Length = 722

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttttgccttgtgtaacttttaattaatgatgacaatttctgacatattttctttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttttttgccttgtgtaacttttaattaatgatgacaatttctgacatattttctttatg 269

                                                                       
Query: 61  tgtctatcataaatgcagacccaaacccttaaatgacttcctaccattggcagtggcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgtctatcataaatgcagacccaaacccttaaatgacttcctaccattggcagtggcatc 209

                                                                       
Query: 121 tgtccttgttgtttgatggtgctgggattgaactcatggccttgcacaggatgggcatgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 208 tgtccttgttgtttgatggtgctgggattgaactcatggccttgcacaggctgggcatgc 149

                                                                       
Query: 181 attctcgcactgcaccccagccctggcaggagaggttttaaatctcactttccaggctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 attctcgcactgcaccccagccctggcaggagaggttttaaatctcactttccaggctgg 89

                                                                       
Query: 241 ctattagtaaagtgcttatcttgaaagcccggtaccctgagttcagatctccagggccca 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 88  ctattagtaaagtgcttatcttgaaagcccgggaccctgagttcagatctccagggccca 29

                             
Query: 301 tgtaaaaagccaggtgtg 318
           ||||||||||||||||||
Sbjct: 28  tgtaaaaagccaggtgtg 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no122_f05.g1 MSMg01no122_f05.g1 CHROMAT_FILE:
MSMg01no122_f05.g1 PHD_FILE: MSMg01no122_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:39 2005
         (678 letters)



>mm_chr5_31691143_31692220
          Length = 1078

 Score = 1164 bits (602), Expect = 0.0
 Identities = 659/678 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacatccttaatcatcagggaaaagcaaatcaaatcaaccctgagattccacctcaca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaacatccttaatcatcagggaaatgcaaatcaaatcaaccctgagattccacctcaca 260

                                                                       
Query: 61  ccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgagaatgtggt 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ccagtcagaatggctaagataaaaaattcaggtgacagcagatgctggcgaggatgtggt 320

                                                                       
Query: 121 gaaagaggaacactccttcattgttggtgggattgcaggcttgtacaaccactctggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagaggaacactccttcattgttggtgggattgcaggcttgtacaaccactctggaaa 380

                                                                       
Query: 181 tcagtccggcggttcctcagaaaattggacatagtactaccggaggatccaacaatacct 240
           |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tcagtctggtggttcctcagaaaattggacatagtactaccggaggatccagcaatacct 440

                                                                       
Query: 241 ctcctgggcatatatccagaagatgtcccaaccggtaataaggacacatgctccactatg 300
           || ||||||||||| |||||||||||||||||| |||| ||||| |||||||| ||||||
Sbjct: 441 cttctgggcatatacccagaagatgtcccaacctgtaagaaggatacatgctctactatg 500

                                                                       
Query: 301 ttcataacagccttatttataatagccagaagcttgaaagaacccagatgcccctcaaca 360
           |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 501 ttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaaga 560

                                                                       
Query: 361 gaggaatggatacagaaaatgtggtacatttacacaatggagtactactcagctattaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggaatggatacagaaaatgtggtacatttacacaatggagtactactcagctattaaa 620

                                                                       
Query: 421 aacaacaaattcatgaaattctttctaaactacaacccccctgtgaatcaagaatcagga 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 aacaacaaattcatgaaattctttctaaactccaacccccctgtgaatcaagaatcagga 680

                                                                       
Query: 481 gacaaaggtacaaaggtttccagaccaggtaattcatttatagaacgagagatatataac 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 681 gacaaaggtacaaaggtttccagaccaggtaattcatttatagaaagagagatatataaa 740

                                                                       
Query: 541 cttttaatacttgaagatgataaacacaataaatatagttttggctttatgtgatgatat 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttttagtacttgaagatgataaacacaataaatatagttttggctttatgtgatgatat 800

                                                                       
Query: 601 tttgaatggtttggcaggggtggatttagaggaaatagacatcttatcagttactggtat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttgaatggtttggcaggggtggatttagaggaaatagacatcttatcagttactggtat 860

                             
Query: 661 tgcaatatttattctctt 678
           ||||||||||||||||||
Sbjct: 861 tgcaatatttattctctt 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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