BAC Information

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BAC

Clone NameMSMg01-122P19
Chromosome5 (Build37)
Map Location 27,273,940 - 27,351,014
singlet/doubletdoublet
Overlap geneDpp6
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1, Htr5a, EG433862, LOC231069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122P19.T7 (MSMg01no122_p19.b1)MSMg01-122P19.TJ (MSMg01no122_p19.g1)
ACCAG332708AG332709
length1,0631,069
length of high quality
(start - end)
725 (88 - 812)775 (87 - 861)
definitionCHROMAT_FILE: MSMg01no122_p19.b1 PHD_FILE: MSMg01no122_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:04 2005CHROMAT_FILE: MSMg01no122_p19.g1 PHD_FILE: MSMg01no122_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,350,324 - 27,351,014)(27,273,940 - 27,274,714)
sequence
NCGGATTGTNNNNNGGACACTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCCCTGGATCATAAGTATATCTGCGGTGCCATAAAGCAAA
GGGATACAGGTTAAAATCATGCAAAAGAAGATGCACATGAGGTAGTCTAA
GTGCATCAGTGAATCAGTGAGAAGTTGATGGATGCTAGTGAAGTCTCATG
GCAAAATTAATGCTCTCTAAATTGTGCTACCAACCAAGGAAGCTTAATTA
ATCCTCTCTGATCAGGGCTGTCCCTGGGTTTGCTCACATAAGTGAGTAGT
ATTTACATGGTCGACTTCACTTGCTCACTCTATCCAACAACAAAACCAAC
CTTCACTGTGGGTAGTATCCTTAGGGTAAAACATCTGATCAACCCTGAAC
CACGTGGCCCAAGGCCTGAGGCATATACATACAGGAACACAAAATGTTCC
AGAGGCTGACATCTAATTTCCCAGGAGTCTGCCAAGGGATGTTTCAGAAG
ACGGGCTTTTCTTGGGGGAGTAAGGAGGTTCCTGCTGCCTCAGGTCTTTG
GTATCGGTTTCCACTTCCTCTCCAAGGTTCAAAGGCTTTCAAACTCTGTG
CCTGCTGTATGCTCTAAGAAATACGTTTTGTGGCCTGTCCAAGTCAGTCA
GAATTGCAGCATGGATGGAGAAGGTCTCATGAGACCCCATCCCTATCTGA
GGAGCTGTGGCAGATCCAGTTTTCATCAGGGCTGTGGCCCCTGGTAGATT
GCTCATACTGCTCCCATGCACATAAGGGCATCACTAACTGGATTCAGTGA
GTTAAAAAAGAAAAGAAAACGAAGAGACAAGGTTGAGGGAGTCTGGTTTA
TGAAGAGGAGGAGGAGGAAGTGAGGGTGTGTTTTTTNTTTTTTTTTTTTT
TTTCTTTTTTTTTTTTTCCTCTTCTCCCTTTCCTCTTCTTTCTTTCTCTC
TTCTTTTTTTCTCTCCTTCTTTCTCCTCTCCTTTTCTTTTCCTCTTTCTC
TTTTTCTTTTCTTCCTTNTCTCTCTTTCTCTCTCTCTNTTCTCTTCNTCT
TTTTTTTTCTTTT
CCTTTAACNNNNNAATGACGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGTGTCACAGAAACTATC
TGCAGCTCTCAAAATTATATCCCTGTGAGGCGAATCATAGTCAGCTCCTG
TGGACAATCTGAAGGATATGCCCATATCCCACACCTGGGATTAAAACAAA
ACCAAATTCTTATAGTATTTCTGTGTTTCTTAAGGAAACCAAAATTCTCA
CTACAGGCTTTCTCCTAAATATTTGTATTTCAGTAGGACAACATTGAATT
TCATCAATAAAATTCTCACCTGGAGTCTTGGATGTACTCAGTCATCTTTT
AAGAGTCTGGAAGAAGTGTGAGAGCAGGTTCTAGCTAGCTTCTACAAGGC
CATAGCCTCCCTGGTGAAAGATGGTCAAATACAGAAGGAAACCCTTGATG
TAGACTACGCAGATGGCATTTCAGAGCCGAGGAGAAGGGGGAGAGATAGA
TAGTGTCTTCTGGCTGGGCAAAGCTTTCTGGAAGGTGTGATAAGTCAAAG
ATGGATAATATTCGTCACCTTTAAAAAGGAATTGAAGGGCTCAAGAGATG
CTTTAACACTTAAGGGAAGGGTGAGGACTGGAGTCCATAGCCCTAGAACC
CATGAAGCACTAGGTAGGTATGGTAACCCATATGCAGTTCCAGCCTTGAA
GGATAGAGACAGGGATTCCAGAACAAACCGACAATTGAGACCAGTCGTAT
CAGCACACTCTGGATTTGATTGAGAGAACCTGCCTCGATGAATAATGCAG
AAGAGTGGTTGACTATGTTTCCCAACATCATCCACTAGACTCCACAAGAA
TGCACCCATGCATGTCCACACCCATACTCACACATACATGAAAACTGAAA
GCAAGAGCAATTTAAAATTTTAATTAAAATAGGAAGCAGTTTGGACCCCC
CAAGGGAAGGATAAGGTTGTGGGTCCAGGTCCTGTTGGTTTGGGGCCTGC
TCATTTTCCACACTGGTGGCAAAAAAGGAAAAGCTTCTCCCTTCCCAGGG
GTTTAAAAGGAACCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_p19.b1 MSMg01no122_p19.b1 CHROMAT_FILE:
MSMg01no122_p19.b1 PHD_FILE: MSMg01no122_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:04 2005
         (725 letters)



>mm_chr5_27349896_27351020
          Length = 1125

 Score = 1259 bits (651), Expect = 0.0
 Identities = 681/691 (98%), Gaps = 1/691 (0%)
 Strand = Plus / Minus

                                                                        
Query: 36   aaaagaagatgcacatgaggtagtctaagtgcatcagtgaatcagtgagaagttgatgga 95
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 aaaagaagatgcacatgaggtagtctaagtgcatcagtgaatcagtgagaagttgatgga 1060

                                                                        
Query: 96   tgctagtgaagtctcatggcaaaattaatgctctctaaattgtgctaccaaccaaggaag 155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tgctagtgaagtctcatggcaaaattaatgctctctaaattgtgctaccaaccaaggaag 1000

                                                                        
Query: 156  cttaattaatcctctctgatcagggctgtccctgggtttgctcacataagtgagtagtat 215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  cttaattaatcctctctgatcagggctgtccctgggtttgctcacataagtgagtagtat 940

                                                                        
Query: 216  ttacatggtcgacttcacttgctcactctatccaacaac-aaaaccaaccttcactgtgg 274
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 939  ttacatggtcgacttcacttgctcactctatccaacaacaaaaaccaaccttcactgtgg 880

                                                                        
Query: 275  gtagtatccttagggtaaaacatctgatcaaccctgaaccacgtggcccaaggcctgagg 334
            |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 879  gtagtatccttagggtaaaacatctgatcaaccccgaaccacgtgtcccaaggcctgagg 820

                                                                        
Query: 335  catatacatacaggaacacaaaatgttccagaggctgacatctaatttcccaggagtctg 394
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819  catatacaaacaggaacacaaaatgttccagaggctgacatctaatttcccaggagtctg 760

                                                                        
Query: 395  ccaagggatgtttcagaagacgggcttttcttgggggagtaaggaggttcctgctgcctc 454
            ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 759  ccaagggatgtttcagaagactggcttttcttgggggaataaggagggtcctgctgcctc 700

                                                                        
Query: 455  aggtctttggtatcggtttccacttcctctccaaggttcaaaggctttcaaactctgtgc 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  aggtctttggtatcggtttccacttcctctccaaggttcaaaggctttcaaactctgtgc 640

                                                                        
Query: 515  ctgctgtatgctctaagaaatacgttttgtggcctgtccaagtcagtcagaattgcagca 574
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  ctgctgtatgctatgagaaatacgttttgtggcctgtccaagtcagtcagaattgcagca 580

                                                                        
Query: 575  tggatggagaaggtctcatgagaccccatccctatctgaggagctgtggcagatccagtt 634
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  tggatggagaaggtctcataagaccccatccctatctgaggagctgtggcagatccagtt 520

                                                                        
Query: 635  ttcatcagggctgtggcccctggtagattgctcatactgctcccatgcacataagggcat 694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519  ttcatcagggctgtggcccctggtagattgctcatactgctcccatgcacataagggcat 460

                                           
Query: 695  cactaactggattcagtgagttaaaaaagaa 725
            |||||||||||||||||||||||||||||||
Sbjct: 459  cactaactggattcagtgagttaaaaaagaa 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1125
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1115
Effective search space:   797225
Effective search space used:   797225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no122_p19.g1 MSMg01no122_p19.g1 CHROMAT_FILE:
MSMg01no122_p19.g1 PHD_FILE: MSMg01no122_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:05 2005
         (775 letters)



>mm_chr5_27273740_27274914
          Length = 1175

 Score = 1392 bits (720), Expect = 0.0
 Identities = 762/776 (98%), Gaps = 2/776 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacagaaactatctgcagctctcaaaattatatccctgtgaggcgaatcatagtcagct 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tcacagaaactatctgcagctctcaaaattatacccctgtgaggcgaatcatagtcagct 260

                                                                       
Query: 61  cctgtggacaatctgaaggatatgcccatatcccacacctgggattaaaacaaaaccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtggacaatctgaaggatatgcccatatcccacacctgggattaaaacaaaaccaaa 320

                                                                       
Query: 121 ttcttatagtatttctgtgtttcttaaggaaaccaaaattctcactacaggctttctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttatagtatttctgtgtttcttaaggaaaccaaaattctcactacaggctttctcct 380

                                                                       
Query: 181 aaatatttgtatttcagtaggacaacattgaatttcatcaataaaattctcacctggagt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aaatatttgtatttcagtaggacaacattgaatttcattaataaaattctcacctggagt 440

                                                                       
Query: 241 cttggatgtactcagtcatcttttaagagtctggaagaagtgtgagagcaggttctagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 cttggatgtactcagtcatcttttaagagtctggaagaagtgtgagagcaggttctatct 500

                                                                       
Query: 301 agcttctacaaggccatagcctccctggtgaaagatggtcaaatacagaaggaaaccctt 360
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 agcttctacaagaccatagcctccctggtgaaagatggccaaatacagaaggaaaccctt 560

                                                                       
Query: 361 gatgtagactacgcagatggcatttcagagccgaggagaagggggagagatagatagtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgtagactacgcagatggcatttcagagccgaggagaagggggagagatagatagtgt 620

                                                                       
Query: 421 cttctggctgggcaaagctttctggaaggtgtgataagtcaaagatggataatattcgtc 480
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 621 cttctggctgggcaaagctttctggaaggtgtgataagtcaaagatagataatatttgcc 680

                                                                       
Query: 481 accttt-aaaaaggaattgaagggctcaagagatgctttaacacttaagggaagggtgag 539
           ||| || |||||| |||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 681 acccttcaaaaag-aattgaagggctcaggagatgctttaacacttaagggaagggtgaa 739

                                                                       
Query: 540 gactggagtccatagccctagaacccatgaagcactaggtaggtatggtaacccatatgc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gactggagtccatagccctagaacccatgaagcactaggtaggtatggtaacccatatgc 799

                                                                       
Query: 600 agttccagccttgaaggatagagacagggattccagaacaaaccgacaattgagaccagt 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agttccagccttgaaggatagagacagggattccagaacaaaccgacaattgagaccagt 859

                                                                       
Query: 660 cgtatcagcacactctggatttgattgagagaacctgcctcgatgaataatgcagaagag 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 cgtatcagcacactctggatttgattgagagaacctgcctcgatgaataatgcagaagag 919

                                                                   
Query: 720 tggttgactatgtttcccaacatcatccactagactccacaagaatgcacccatgc 775
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tggttggctatgtttcccaacatcatccactagactccacaagaatgcacccatgc 975


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 775
Length of database: 1175
Length adjustment: 10
Effective length of query: 765
Effective length of database: 1165
Effective search space:   891225
Effective search space used:   891225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)