Query= MSMg01no122_p19.b1 MSMg01no122_p19.b1 CHROMAT_FILE:
MSMg01no122_p19.b1 PHD_FILE: MSMg01no122_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:04 2005
(725 letters)
>mm_chr5_27349896_27351020
Length = 1125
Score = 1259 bits (651), Expect = 0.0
Identities = 681/691 (98%), Gaps = 1/691 (0%)
Strand = Plus / Minus
Query: 36 aaaagaagatgcacatgaggtagtctaagtgcatcagtgaatcagtgagaagttgatgga 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 aaaagaagatgcacatgaggtagtctaagtgcatcagtgaatcagtgagaagttgatgga 1060
Query: 96 tgctagtgaagtctcatggcaaaattaatgctctctaaattgtgctaccaaccaaggaag 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tgctagtgaagtctcatggcaaaattaatgctctctaaattgtgctaccaaccaaggaag 1000
Query: 156 cttaattaatcctctctgatcagggctgtccctgggtttgctcacataagtgagtagtat 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 cttaattaatcctctctgatcagggctgtccctgggtttgctcacataagtgagtagtat 940
Query: 216 ttacatggtcgacttcacttgctcactctatccaacaac-aaaaccaaccttcactgtgg 274
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 939 ttacatggtcgacttcacttgctcactctatccaacaacaaaaaccaaccttcactgtgg 880
Query: 275 gtagtatccttagggtaaaacatctgatcaaccctgaaccacgtggcccaaggcctgagg 334
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 879 gtagtatccttagggtaaaacatctgatcaaccccgaaccacgtgtcccaaggcctgagg 820
Query: 335 catatacatacaggaacacaaaatgttccagaggctgacatctaatttcccaggagtctg 394
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 catatacaaacaggaacacaaaatgttccagaggctgacatctaatttcccaggagtctg 760
Query: 395 ccaagggatgtttcagaagacgggcttttcttgggggagtaaggaggttcctgctgcctc 454
||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 759 ccaagggatgtttcagaagactggcttttcttgggggaataaggagggtcctgctgcctc 700
Query: 455 aggtctttggtatcggtttccacttcctctccaaggttcaaaggctttcaaactctgtgc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aggtctttggtatcggtttccacttcctctccaaggttcaaaggctttcaaactctgtgc 640
Query: 515 ctgctgtatgctctaagaaatacgttttgtggcctgtccaagtcagtcagaattgcagca 574
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctgctgtatgctatgagaaatacgttttgtggcctgtccaagtcagtcagaattgcagca 580
Query: 575 tggatggagaaggtctcatgagaccccatccctatctgaggagctgtggcagatccagtt 634
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tggatggagaaggtctcataagaccccatccctatctgaggagctgtggcagatccagtt 520
Query: 635 ttcatcagggctgtggcccctggtagattgctcatactgctcccatgcacataagggcat 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttcatcagggctgtggcccctggtagattgctcatactgctcccatgcacataagggcat 460
Query: 695 cactaactggattcagtgagttaaaaaagaa 725
|||||||||||||||||||||||||||||||
Sbjct: 459 cactaactggattcagtgagttaaaaaagaa 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1125
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1115
Effective search space: 797225
Effective search space used: 797225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_p19.g1 MSMg01no122_p19.g1 CHROMAT_FILE:
MSMg01no122_p19.g1 PHD_FILE: MSMg01no122_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:05 2005
(775 letters)
>mm_chr5_27273740_27274914
Length = 1175
Score = 1392 bits (720), Expect = 0.0
Identities = 762/776 (98%), Gaps = 2/776 (0%)
Strand = Plus / Plus
Query: 1 tcacagaaactatctgcagctctcaaaattatatccctgtgaggcgaatcatagtcagct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tcacagaaactatctgcagctctcaaaattatacccctgtgaggcgaatcatagtcagct 260
Query: 61 cctgtggacaatctgaaggatatgcccatatcccacacctgggattaaaacaaaaccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtggacaatctgaaggatatgcccatatcccacacctgggattaaaacaaaaccaaa 320
Query: 121 ttcttatagtatttctgtgtttcttaaggaaaccaaaattctcactacaggctttctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttatagtatttctgtgtttcttaaggaaaccaaaattctcactacaggctttctcct 380
Query: 181 aaatatttgtatttcagtaggacaacattgaatttcatcaataaaattctcacctggagt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aaatatttgtatttcagtaggacaacattgaatttcattaataaaattctcacctggagt 440
Query: 241 cttggatgtactcagtcatcttttaagagtctggaagaagtgtgagagcaggttctagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 cttggatgtactcagtcatcttttaagagtctggaagaagtgtgagagcaggttctatct 500
Query: 301 agcttctacaaggccatagcctccctggtgaaagatggtcaaatacagaaggaaaccctt 360
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 agcttctacaagaccatagcctccctggtgaaagatggccaaatacagaaggaaaccctt 560
Query: 361 gatgtagactacgcagatggcatttcagagccgaggagaagggggagagatagatagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgtagactacgcagatggcatttcagagccgaggagaagggggagagatagatagtgt 620
Query: 421 cttctggctgggcaaagctttctggaaggtgtgataagtcaaagatggataatattcgtc 480
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 621 cttctggctgggcaaagctttctggaaggtgtgataagtcaaagatagataatatttgcc 680
Query: 481 accttt-aaaaaggaattgaagggctcaagagatgctttaacacttaagggaagggtgag 539
||| || |||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 acccttcaaaaag-aattgaagggctcaggagatgctttaacacttaagggaagggtgaa 739
Query: 540 gactggagtccatagccctagaacccatgaagcactaggtaggtatggtaacccatatgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gactggagtccatagccctagaacccatgaagcactaggtaggtatggtaacccatatgc 799
Query: 600 agttccagccttgaaggatagagacagggattccagaacaaaccgacaattgagaccagt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agttccagccttgaaggatagagacagggattccagaacaaaccgacaattgagaccagt 859
Query: 660 cgtatcagcacactctggatttgattgagagaacctgcctcgatgaataatgcagaagag 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 cgtatcagcacactctggatttgattgagagaacctgcctcgatgaataatgcagaagag 919
Query: 720 tggttgactatgtttcccaacatcatccactagactccacaagaatgcacccatgc 775
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tggttggctatgtttcccaacatcatccactagactccacaagaatgcacccatgc 975
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 775
Length of database: 1175
Length adjustment: 10
Effective length of query: 765
Effective length of database: 1165
Effective search space: 891225
Effective search space used: 891225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
