BAC Information

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BAC

Clone NameMSMg01-122P20
Chromosome5 (Build37)
Map Location 73,166,715 - 73,167,122
singlet/doubletsinglet
Overlap geneTec
Upstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk
Downstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122P20.T7 (MSMg01no122_p20.b1)MSMg01-122P20.TJ (MSMg01no122_p20.g1)
ACCAG332710AG332711
length1,1821,171
length of high quality
(start - end)
412 (46 - 457)616 (121 - 736)
definitionCHROMAT_FILE: MSMg01no122_p20.b1 PHD_FILE: MSMg01no122_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:05 2005CHROMAT_FILE: MSMg01no122_p20.g1 PHD_FILE: MSMg01no122_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATCTTNNNNNGCTCTCTGGGCGCTAACGACTCCTATANGGAGAGGAT
CCGCGGAATTCAAAGGCTCCCCCCTGCCTTTAGAAAGGTAAAATCACAAC
AAGCAAAACGCAAGATAACCTTTCTGACTGCCACCTGAATGTTTTTAGAG
AGCACCTGAATGCCTAGTAAAGTGCAATACCCTGTAATGACTTTGGAGCC
TGTGGTGATGAGCCAAGGTTAGGAAGGATCGACCTGTGCATCACACTTTA
TGAAATGAGGCCAAATTCAACAGAACTGTACTATGGTCAGTGCAGACCAT
ATGATCAAGCTATTTATGAATGCAATTGAAATGTGGTAATAAATTGGAAG
GGATTCATTTTATCTCTAAGGCTTTTCTGATGATATAAGAAATATGTGTC
AGATGTCCAGAACTGTCACACTCACACACACACATGCACACACACGCGCA
CACACACACTTACACACCATATGGTTAAGAAAAGTTAGCTAGTTAGACAC
TATAAACTAGCAAAATGTATAAATTAGAAAATTCTTATTTATCAACAAAC
AGAAGGTCCAGTTTTAGATTCCCATGGCGAAAGCAAGGGAGGGAAACTTG
GTTCAGGTGCAGGAAACTTGGAGAGCTACAATATGGCTTTAAGAAAATAG
TAAGATACCCAGGAAAACAAGGTAGTCCTCTCCTCACACTGTAAATCCAG
ATCCCAGGAAAGGATAAAGGCATCATGAGAGAGAGAGAGGATGCTGGCAC
AGGAAGCTGCTCTTAGAAACCTGTTCTAGAGACTTATTTCTGAAGCATCT
ACAGACTCCTGAAAAAGATCTTTGCATCCTTAAAACAGACTGTGGTTTCT
ACCCCACCCCTAGTCTTTCTTAGTCCACCTGACCTCAGCAAGTATGGCTC
TGGCAGGCCTTCCCCCTTCACGATCCCCTCCTGCCTTGCTTAAAACCCTT
TACATATTTATTCCTAAAGCCAGCCCCCCAGGGCCTTGTTCCCTTTATTT
GGCCCTCTTCCTTCCTCCCTTGATTTTAATCCCTCCATGTCTCCTCTGTT
CCCCAAGTTTTTTAATTTCCTTTTATTTCAATTATCCCCCTCTCTCCTCT
CTCCTTATTCCCACTTTTAATCTTCCCCCATCCTCCAACATGTGGTTTCC
CTCCCATTTGCACCTTTTTTAAATCTGCCCCC
TTTTGTTTGTATGGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGATGAAACATAATAAAAAAATATACTG
AAAGGGTTCATATCTATAAGTTAGAAATTTACTTTTGAGCAGTTTCCAAA
TTAGTAATATTCACCTTTCCATATTTCCTAAATTATTTTATCACATGACC
ATTTGCATAAAAAGTATTCAACTAAAGAGATAGAATATGTAAACTGTATT
TTAAAATGTATTTATTTTATGTATATGAGTGTTCTATCTTCACATACACC
TACAAGAGGACCTAAGATCACATTACGGACAGTTCTGAGCCACCATGTGG
TTGCTGGGGATTGAACTCAGGATCTCTGCAAGAGCAGACAGTGCTCTTAT
CCAATGAGTCATCTCTCCAGCGCCATAAACTATATTTTAAAGTGACTGCT
ATTTAAAAATATATTTTGTAGACTTATACTGTGAGGAATTTTTTTTTCTT
GAACATAATTTTTACATGGTTTAGTAGAACCAGTTTAAATGTGTGTTTTA
AGAAGTTCACAGAATTTTTATTTTAAAAGTTCTACTTACCAAATATATAC
ATATTTTTAAGCATAAGAATTTCATTACGCCAGGCGGTGGTGGCACACAC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGATTTCTGAGTTCGAG
GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG
AAACCCTGTCTCGAAAAACCAAAAAACAAACAAACAAACAAAGAAAAAAG
AATTTCCTTACATGTAAATAATTAAAATATCCCATAAAAGAAGAATTTCA
TTGTATCTCCACTATGAAAACTCTGAGGCATGTACAGCATACCGAAATTT
TGACAGAGGTTGCCCTGTAAAGTTTATAGTTAAAACCTAAGAAATGATGC
TTTAAACCCCAAAACCCTTCTCAGAATCTTTTCAATGTTGAGTTTGGAAG
GTATTTCCCAACTTCTCCCCCAATGGCTTGCCCTCTTGTAATCACCTTGG
ATTAACGCCCCACTCTTTCATCTTTTACTGAAACGTTGGGGTCATTGGTC
TATAAAACCATCTGTGTTATTTCCGACACCATATCTTTAATACCCCCGGC
AATATTTTCCTTTTTCTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_p20.b1 MSMg01no122_p20.b1 CHROMAT_FILE:
MSMg01no122_p20.b1 PHD_FILE: MSMg01no122_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:05 2005
         (412 letters)



>mm_chr5_73166511_73167322
          Length = 812

 Score =  679 bits (351), Expect = 0.0
 Identities = 392/409 (95%), Gaps = 8/409 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattcaaaggctcccccctgcctttagaaaggtaaaatcacaacaagcaaaacgcaaga 70
           |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggctcccccctgg-ttgagaaaggtaaaatcacaacaagcaaaacgcaaga 263

                                                                       
Query: 71  taac----ctttctga---ctgccacctgaatgtttttagagagcacctgaatgcctagt 123
           |||     ||  ||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagaaagctgactgaattctgccacctgaatgtttttagagagcacctgaatgcctagt 323

                                                                       
Query: 124 aaagtgcaataccctgtaatgactttggagcctgtggtgatgagccaaggttaggaagga 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 aaagtgcaataccctgtaatgactttggagcctgtggtgatgagccaaggttaggaagaa 383

                                                                       
Query: 184 tcgacctgtgcatcacactttatgaaatgaggccaaattcaacagaactgtactatggtc 243
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaactgtgcatcacactttatgaaatgaggccaaattcaacagaactgtactatggtc 443

                                                                       
Query: 244 agtgcagaccatatgatcaagctatttatgaatgcaattgaaatgtggtaataaattgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgcagaccatatgatcaagctatttatgaatgcaattgaaatgtggtaataaattgga 503

                                                                       
Query: 304 agggattcattttatctctaaggcttttctgatgatataagaaatatgtgtcagatgtcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agggattcattttatctctaaggcttttctgatgatataagaaatatgtgtcagatgtcc 563

                                                            
Query: 364 agaactgtcacactcacacacacacatgcacacacacgcgcacacacac 412
           ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 agaactgtcacactcacacacacacatgcacacacacgcacacacacac 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)