BAC Information

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BAC

Clone NameMSMg01-123B17
Chromosome5 (Build37)
Map Location 139,867,675 - 139,868,007
singlet/doubletsinglet
Overlap gene3110082I17Rik, Gpr146
Upstream gene2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, D830046C22Rik
Downstream geneC130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123B17.T7 (MSMg01no123_b17.b1)MSMg01-123B17.TJ (MSMg01no123_b17.g1)
ACCAG332799AG332800
length1,2531,251
length of high quality
(start - end)
281 (128 - 408)329 (129 - 457)
definitionCHROMAT_FILE: MSMg01no123_b17.b1 PHD_FILE: MSMg01no123_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:22 2005CHROMAT_FILE: MSMg01no123_b17.g1 PHD_FILE: MSMg01no123_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTCTTNNGGACATGCGGTGCTATAGACTCCTAAGGGAGAGGATCCGCG
GAATTCTGGGTGTTTGCTCCTGTTCTTTCTTTCGTTCCTTTTTTTGTGGG
GGGAGGGGCAGGCCCCTTAAGAGTTCTAGACAGCTTGGCCCTTACTAAGT
AGCCCAGGCTCGTCTCCAACTAATAGCAATCCTCCTGTCTCAGTATTTTA
AGCGCTGGAATTTCAAGCATGAGTCACCATGTCCAGCCCAGCTTTCTCTA
TCTTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCTCCCTTCCTCCTA
CCTCTCTTCACCACCCCCCATGTTCATGTCTGTTGGAACATGCATATGGA
GGTCAGAGGACAACCTCTGGGGTCATTTCTCAGGCTCTGTCTACCTTGCA
CTGTTGATTTTTTATCTCTTGCTATTCTCAAGCCCATTGGTTGGCTAGGT
TAACAGGCCTTTTTTTTTCCCCGCCCCCGTTTCATGCCCACTGTCTTGTA
AAAAAAGAGGGGGAGCTTACTCATTACTTTTACTACATCTAGAACTAATT
GATCTCCTAGTTAAGCCAGGTGTGCTCGTCTCCTACCTCCACTCTTACCA
TCTCTACTATTTTTATTGCGTTCGTACTTTCGTGTATCTTAAATTCTCCT
TGTTCCTTCACTTGAATTTGCCCCTTTCTCTCTTTTATTTTACATGCTAC
CCTCTTTTCTTAATTTTACTCTTCCCTTTTTCACCTTTGTTTCTCCTTGT
GTTTTCCCTCTTACCTTTCCTTCTTTATCTCCTCTCCCTTTTTTCCTTCT
TCCTCTTTGTCTCCTTCTTTTTACTCTCTTTTCTTCTATTTCTCCGTTCT
TTTCTTTTTCTCCCTCTTTTTTTCCCATCCTTTCTTCTCCTCATTTTTTT
TTCTCCTTTCTTTATTTCTTCTTTTTCCCTTACTTTCCTTTATCTCCTTC
TCTCTCTTTCTTTCTTCCTCTCTCCCCCTCCCTCTCTTTCATTTTTTTTT
CTCTCTCCTTCTTTCTCTCATCTTCTATTCCTTTTCCTCCTCTTTTTTTA
CTTTCACTTCTTACTTTTCTTTCTCCTCCCTCCTCTCCTTTCCCAACTCT
TCTACCTTTCCCTCCTCTCCTCTTTTTTCCCTCTCTATTCTATTCACTAC
TTTCCTCTCAGATCCATTCTCTTCCTTACTTCTTCTTCTACCTCCATTCC
TTCTTCTTCTTACCACACTTCCTACCTTTGCATCTCTTCTATCTCTCTCC
TGC
GTCCTCCTTTAAGATGGCAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTTTTATAGACCCACTTGCCAAACTCG
CACTCACTTAACATCCTTAATGACTGCACAGACTGCAACATGGGCTCTGC
GCTGCCCCGTGGGTCAGTGACCATGGGGGAGGAAAGGAATGCCCAGGCTC
ACCCAGGCCTCCCACGTCTCCCAGCATTGCTGGATCTAGGTGCCCAGCAA
CCTAGCAAGCTTCAAGATAACTACAAAGGGCCTGCCCATCTGGGGGAAAT
TATGTGGGCACAATGCAGCCAGCATCCATGTTCAGTCCCAGGCCTTGTCA
GCCTGGGAGGTGCCTGTGCCTCCTGCCTCCACACACCTCCCGGGCAGCTC
TTCAGGCCCCTTTCTCAGGGTACGGTGCAGGGGGCTACAGGTGTGCAACA
CCCACGCAGGTGTGTCCCCACATTACCAGATGACAGGCTATACTTAGGTC
CTCTACACAAGAAAGAGGGGGCAAGGAGGCAGCCTTGCACTGCCAAGCTG
GTTTGAGGTTCTGTGGGTTCTGTCCCCAAAGCGTCCCCTAACCCGCGTCA
AAAGGTATCAGCAGCTCTGCTCCTGGTGGAGTAGTGTCACAGGAACGCAC
ACAAAAGCCTCTCTGGTGCTTCACCTGGTATTTTGGTTTCCCTCATAAAG
AGTCCAGTAGTCTCACCAAGGCGATGCATGGCTCCCGCCGTCTGACCCGG
ACACACACTCTGCTGCCAGATGCCGGCCTAAGACAGTGCACAGGACAGTG
GTGACTAACCTCTGTCCCTCTCTCCTCACAGTTTGCAATCTGTGGTTGAG
CTGCCCTGTGGTGCTGTGGTCCCACTCTACTTTACATCGTGGTCCTGACT
CACCCCTGGTCCCCAAACCTTGCCCCTGGGGTTTGTGTGTCCCTCTCCCC
TGCTCTTACTCGGGGCGCCGGGTCCNCCTTGTCAACCTTTACTCCAAATC
GCTTCTTCTGGCGCTTGGCTCACTCTTCCCCGTCTTTAACCCTCCTGGCC
CTTGCCTCCAATTCTCACTTCTTGTCAACCTTGCTCCCTGCCCTTCTCCT
TTGTCTTTTACGTTAACTCGCTCTTCTCTTCTTCCTCGGTGTGCNCCCTT
CCCTCTCCTCTTTTGTGCGGCTCTTTTGTTCAAACTCTTCATTCCTCGAT
TTCCTCTCTCTCTCCTTTTGCCTTCTCTCTCCTTCCTCCTGCTCCTTCTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_b17.g1 MSMg01no123_b17.g1 CHROMAT_FILE:
MSMg01no123_b17.g1 PHD_FILE: MSMg01no123_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:22 2005
         (329 letters)



>mm_chr5_139867475_139868203
          Length = 729

 Score =  574 bits (297), Expect = e-168
 Identities = 321/333 (96%), Gaps = 7/333 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagactgcaacatgggctctgcgctgccccgtgggtcagtgaccatgggggaggaaagga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactgcaacatgggctctgtgctgccccgtgggtcagtgaccatgggggaggaaagga 260

                                                                       
Query: 61  atgcccaggctcacccaggcctcccacgtctcccagcattgctggatctaggtgcccagc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcccgggctcacccaggcctcccacgtctcccagcattgctggatctaggtgcccagc 320

                                                                       
Query: 121 aacctagcaagcttcaagataactacaaagggcctgcccatctgggggaaattatgtggg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aacctagcaagcttcaagataactacaaagggcctgcccatctgagggaaattatgtggg 380

                                                                       
Query: 181 cacaatgcagccagcatccatgttcagtcccaggccttgtcagcctgggaggtgcctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaatgcagccagcatccatgttcagtcccaggccttgtcagcctgggaggtgcctgtg 440

                                                                       
Query: 241 cctcctgcctcc-------acacacctcccgggcagctcttcaggcccctttctcagggt 293
           ||||||||||||       ||||||||||||||||||||||||||||||  |||||||||
Sbjct: 441 cctcctgcctcctgcctccacacacctcccgggcagctcttcaggccccgctctcagggt 500

                                            
Query: 294 acggtgcagggggctacaggtgtgcaacaccca 326
           |||||||||||||||||||||||||||||||||
Sbjct: 501 acggtgcagggggctacaggtgtgcaacaccca 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)