BAC Information

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BAC

Clone NameMSMg01-124C11
Chromosome5 (Build37)
Map Location 79,737,559 - 79,920,711
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124C11.T7 (MSMg01no124_c11.b1)MSMg01-124C11.TJ (MSMg01no124_c11.g1)
ACCAG333579AG333580
length1,2561,259
length of high quality
(start - end)
279 (117 - 395)492 (121 - 612)
definitionCHROMAT_FILE: MSMg01no124_c11.b1 PHD_FILE: MSMg01no124_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:52 2005CHROMAT_FILE: MSMg01no124_c11.g1 PHD_FILE: MSMg01no124_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,737,559 - 79,737,837)(79,920,353 - 79,920,711)
sequence
ATTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACAC
AGCTGTAGACCCCTTTAAGACCCAGGGATTCCAGATTTTTCTAGTTTGAA
TTCCTTTAAGACTTACTCTAAATATCACCCTAAAAATAGTGTAAAGGTTT
AGTCAAACCTATACAGATTTGTAAGTATGTACAATCACATTAATTTACAT
ATGTAATGGTAAGAAAGAATCCACAACAACATTAGACCATCCTTTTCACA
GTTATGCTGTCATATTACACACTGAATTGATGCATAAACTACAGAGATAC
AGTTATGTATAAATGCAAAGGGATCCAAACTCTTCTTGGTTTCTCTTTTC
CACTGATATTTAATCTGTTAAAACTGCTTATTTTCATAGCCTGCATTATT
AAGTAAAAGATAACAGTAAAAAAAAGCAAAAGTTTAATACTAGCATTTCA
CACTTTATATACACAATACTTATTTTTATCTGTGAGACTATTGCTCATAT
ACTTAACAATGCATTACACTCAAATCTAAAATAAGCTTATTATTCACCCA
TATATTTACCACTTTTCTTATTTCTCATCAATGGAAAAGGGCAGATCCAT
TGGTACTTACTTTCATCCTGTCCTTACTGAATAGAAAATTAAGAAATGTA
CACCATAAATATTATCATAAAGTGAAAGCCAAAAAAGTTTCTCTAGAAGT
ATTTTCTGCATTTAACTGAGAATAATTGATTTGTTTACAACAAGAGATAC
TTAAACATTCATTCTACTGTATTACATGACACTTTTTTATTTGGTACCTA
GTCACTACAATTATTTTAAAATCCATGCTGCGGCCTCGCCCTGTCATATG
CCTAGATAAGGTTAAAGGCATACATGTAATTTTTTCAGATAATGTCCACT
ATTTTTGTTTGTCCTGCAAGGCTGATCTCCACAAATGCAGGGTCCTTTAA
AAAATTTCCTCCCCAGAACTGCTTTTTTGCTTTTGAAAATCCCCTTCCCG
GCTTTTCCGGCCTCCGGTCCTTTCACCTCCTTCCTATTAATCTCAGTTCT
TCTTGCAAATCATATTTTTGAATAAATTTCTTGCGATATTATAGGCTCTT
TTTAAATAAATTAATTGCATTTTTTAAAATTTCCTGAAACTGAATCTCTA
GTGGTCTTTTTATCTAAAATATTTCTTTCGAATATGGTTGGCTTCTCTTT
TACATACAGATTTTTCCCTTACTTTAACATTTCCCAGTGGCTATTCCCAA
ACACGC
TTTAAGACTGGGGCTTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTTAGGGGCGTAAGAAACCATAGAAAGATATGA
AAGAGGCCTTATGGTACCGAGCTTGATTCTAGATACCTAAGCAGAACTCC
AGAAATCACTTCCCTACCACAGAAAGGAAGTACCTGATACGTCCCTATTT
AACATGGACACAGGGAAATGATACAGAGTATCATCTAGTTACTATGAATT
CAGCTCAGAAATGGTTAAAGTTTTTATAAAAATTGTGGTGATCTGAAAAA
GTCTGGCCCCCATAGACTCATATGTTTAAATGCTTGGCTCTTTGAGAATA
GCATCATCACAAGGTGTGGCCTTATTGGAGGAAGTGTGTCACTTGGTGGT
GTTTTTTATGGTCTCCTCTGGTCAGGCTCTGCCCGGTGTAGAATCTAATA
ACCTTATGCTGACGATGGATCAAGATGTATAACTGTCACCTCCTTTTCCA
GCACCACGTCTGCCTGGACCCTGCCATGCTTCCTGCCATGATAATAATAA
AGTAAATTTCTGAAACTCTAAGCAAGCCCTAATTAAAAGTTACTTATAGA
ATTGCCTTGGTCATGTCTCTTCCCAACTATACAATGTTTGCTAAGACACA
TAATGATATGACTTTGGGGTTTCTAATTGTCTAAATAGGCTAAATACTAC
TATTATAGCATATCTGGATCATTTTAAACATATGAATTTGAATCTTATGG
AGATGTTATGTAAGTATAATCTGTATATGTGTCGTACCACTAGGCTTATC
TACCGTATTACATTTGAAACTTGAATTACTTGTAGTTGGGTATCACTATC
TTCCTCTTCACTTTACTTATTGCCTCTATATCCCCTCTTTCTATTCATTA
TATTTTTTTCCACTATTTCTAAATTTGATTCCCTTTGTTAAGATTACTTT
CTTTTCTCCCTGGTATATTCCATCATTGTACTGGTCTCTCCAAGATTTTG
GGTCTTCTTATTCTCCATTTGAACCATTCACTCGATCTAAATTTCCTTTT
TCCGTTCTTTTAGGGACTGTACCTATCTTCAATACTATAATTTACCTCTT
CTCCAATTATATTTAATGTCACATTCTTCTTAAATTGATAATGCCTCTCT
TTCTCCATTGTGATATTTTATTATTGCCCTGCTCCCCCACAGAGTTGGGT
TCCCCACACATCTGAACTTATTTGTCTTTCTAACACCTCATTTATTCCTC
TTTCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_c11.b1 MSMg01no124_c11.b1 CHROMAT_FILE:
MSMg01no124_c11.b1 PHD_FILE: MSMg01no124_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:52 2005
         (279 letters)



>mm_chr5_79737359_79738037
          Length = 679

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaatatcaccctaaaaatagtgtaaaggtttagtcaaacctatacagatttgtaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaatatcaccctaaaaatagtgtaaaggtttagtcaaacctatacagatttgtaagt 260

                                                                       
Query: 61  atgtacaatcacattaatttacatatgtaatggtaagaaagaatccacaacaacattaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtacaatcacattaatttacatatgtaatggtaagaaagaatccacaacaacattaga 320

                                                                       
Query: 121 ccatccttttcacagttatgctgtcatattacacactgaattgatgcataaactacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatccttttcacagttatgctgtcatattacacactgaattgatgcataaactacagag 380

                                                                       
Query: 181 atacagttatgtataaatgcaaagggatccaaactcttcttggtttctcttttccactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacagttatgtataaatgcaaagggatccaaactcttcttggtttctcttttccactga 440

                                                  
Query: 241 tatttaatctgttaaaactgcttattttcatagcctgca 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttaatctgttaaaactgcttattttcatagcctgca 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no124_c11.g1 MSMg01no124_c11.g1 CHROMAT_FILE:
MSMg01no124_c11.g1 PHD_FILE: MSMg01no124_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:52 2005
         (492 letters)



>mm_chr5_79920349_79921240
          Length = 892

 Score =  656 bits (339), Expect = 0.0
 Identities = 354/359 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttgattctagatacctaagcagaactccagaaatcacttccctaccacagaaaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcttgattctagatacctaagcagaactccagaaatcacttccctaccacagaaaggaag 304

                                                                       
Query: 61  tacctgatacgtccctatttaacatggacacagggaaatgatacagagtatcatctagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tacctgatacgtccctatttaacatggacacagggaaatgatacagagtatcatctagtt 244

                                                                       
Query: 121 actatgaattcagctcagaaatggttaaagtttttataaaaattgtggtgatctgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 actatgaattcagctcagaaatggttaaagtttttataaaaattgtggtgatctgaaaaa 184

                                                                       
Query: 181 gtctggcccccatagactcatatgtttaaatgcttggctctttgagaatagcatcatcac 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 183 atctggcccccatagactcatatgtttaaatgcttggctctttgagaatagcatcatcag 124

                                                                       
Query: 241 aaggtgtggccttattggaggaagtgtgtcacttggtggtgttttttatggtctcctctg 300
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 123 aaggtgtggccttattggaggaagtgtgtcacttggtggtgggctttatggtctcctctg 64

                                                                      
Query: 301 gtcaggctctgcccggtgtagaatctaataaccttatgctgacgatggatcaagatgta 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gtcaggctctgcccggtgtagaatctaataaccttatgctgacgatggatcaagatgta 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)