Query= MSMg01no124_h10.b1 MSMg01no124_h10.b1 CHROMAT_FILE:
MSMg01no124_h10.b1 PHD_FILE: MSMg01no124_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:35 2005
(276 letters)
>mm_chr5_33382064_33382740
Length = 677
Score = 464 bits (240), Expect = e-135
Identities = 268/278 (96%), Gaps = 3/278 (1%)
Strand = Plus / Plus
Query: 1 aagaaggcccgctaaagaaaaaaaacccgatctcttctgggctttccttaaggcgacctt 60
||||||||||| ||||||||||||| | ||||||||||||||||| ||| ||||||||||
Sbjct: 201 aagaaggcccgttaaagaaaaaaaaac-gatctcttctgggctttactttaggcgacctt 259
Query: 61 gccagagcgctgctgtgacacactccctggattccgcagccctcggctgacacaggtgaa 120
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtcagagcgctgctgtgatacactccctggattccgcagccctcggctgacacaggtgaa 319
Query: 121 attgagaaagaggtaggaagggttccaatg--gggtgacagcgtcgacctgctgggcttt 178
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 320 attgagaaagaggtaggaagggttccaaggaggggtgacagcgtcgacctgctgggcttt 379
Query: 179 ctcatcctctaaccacctctggctaacatcctcctgccaggggaacagttccaccccctg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcatcctctaaccacctctggctaacatcctcctgccaggggaacagttccaccccctg 439
Query: 239 ggctgagccggtgccaaacaacaggtggtagtcaaggt 276
||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggctgagccggtgccaaacaacaggtggtagtcaaggt 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no124_h10.g1 MSMg01no124_h10.g1 CHROMAT_FILE:
MSMg01no124_h10.g1 PHD_FILE: MSMg01no124_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:36 2005
(271 letters)
>mm_chr5_33505957_33506629
Length = 673
Score = 470 bits (243), Expect = e-137
Identities = 265/273 (97%), Gaps = 2/273 (0%)
Strand = Plus / Minus
Query: 1 gtcattctcttggttttgttttcgagtttcacttaagttgctctcattgagggatagaat 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 473 gtcattctcttggttttgttttcgagtttcacttaagttactctcattgagggatagaat 414
Query: 61 ggga--tttttttttaaaattgggatctaccagcacagaatttaatcattgattaagttc 118
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 413 gggattttttttttttaaattgggatctactagcacagaatttaatcattgattaagttc 354
Query: 119 accttgtttctgtggaagagttcctggtgctcagaagagactaagttgtaattgtgtgga 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 353 accttgtttctgtggaagagttcctgatgctcagaagagactaagttgtaattgtgtgga 294
Query: 179 gatggtatttccagagagttgattactgcctgcaacaatcgtcccaatccagcaataaac 238
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 293 gatggtattttcagagagttgattactgcctgcaacaatcgtcccaattcagcaataaac 234
Query: 239 tcactgtggaaatagagcagcagctgactacaa 271
|||||||||||||||||||||||||||||||||
Sbjct: 233 tcactgtggaaatagagcagcagctgactacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 673
Length adjustment: 9
Effective length of query: 262
Effective length of database: 664
Effective search space: 173968
Effective search space used: 173968
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
