BAC Information

Click to search

BAC

Clone NameMSMg01-124I04
Chromosome5 (Build37)
Map Location 83,952,379 - 83,953,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124I04.T7 (MSMg01no124_i04.b1)MSMg01-124I04.TJ (MSMg01no124_i04.g1)
ACCAG333845AG333846
length1,2361,236
length of high quality
(start - end)
370 (32 - 401)698 (80 - 777)
definitionCHROMAT_FILE: MSMg01no124_i04.b1 PHD_FILE: MSMg01no124_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:42 2005CHROMAT_FILE: MSMg01no124_i04.g1 PHD_FILE: MSMg01no124_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCAACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGA
ATTCTTTGTTTAGCTCTGAGGTACCATAGAACTCCTAAAGCTTACAAACA
ACTTCAGCAAAGCATATGGATATAAAATTATCTCAAACCAATCATTGTCC
TTCCTCTACACAAAGATTAAACTGGCTGAGAAAGAAAATGGGAAACAACA
CCCATCACAATAGTTAGAAAAATTATAAAGTACCTTGGTGTGACTCTAAC
TAAGGAAGTGAAAGATCTGTATGACAAGAATTTCAAGTCTCTGTAGAAAG
AAATCAAAGAAGATCTCAGAGGGATGCTCCAACATGTAACACATGCTCCA
CTATGTTCATGGCAGCCTTATTTATATTAGCCAGGAGCTGGGAAAAAACA
ACAACAAGAACAACAAACAACAACAACAACAAAACAAAAACAAAAACAAA
TGTCCCTTTTTTTTACCCCCCCCATAGAAAATGTGGCACCTTCACACAAA
AGAGTACTATTAAATCAATGAATTTATGAAATCTTAGGCTAATGGATGGA
ACTAGATAATATCATCTTGAATGAGGGTAACAAATCACAAAACAGCAGAC
ATGATATGCACTCACTGATAAGTGGATATCAGTCCAGAAGCTTGGAATAC
CCAAGATACAATTCACAACCCACATGAAACTCAAGAAGAAAGAGGACCAA
TCTATGGATACATTCACCCATCTGAGAAGGGGGGACAAATTACACATGGA
AGGAGTTACAGCGATAATGTGTGCAACAGAGACCTGAAGAATGATCATCC
AGAGACGTCCCCACCTGGGGATCCCTCCCATATACAATCACCAAACCCAG
AAACTTTTGTGGATGCCCACAAGTGCTTGCTGACAAAAACCTGTCTTTGG
AGAGGCTCTGACCGTGCCTGCCCAATACAGAAGTGCACCCTCCCAGCTTA
CCATTGACCGAACCCAGGGTCCCCGTGAACGAACTAGACAAAGGACCCCC
AGTGCTGAACGGCTTAGCCAACCCCCTAGGAAGGACACCAATTTGAAACT
ATCCATTACCCCCCCGAAACAACTACCACCCAAAATCCCCCACTCCCGAA
AAACCCCTGGGGGGCACTCTTGATTCCCCGCCGCCTATACACCAACAGCG
AATAACCAAGTCTCCTCCCTCCATGTCGCAGACAAGGCAACCTCGCTCCC
GCTAAAGCGCCCACACCCCTCTCGGCTCCCCCCAAA
TTTTTATAGAGGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTTAGATAAGAAATAAATAATTTTTTGTC
AATGTGGAGACCTTTTTCAAATTCTATAATGGAATGGAGAAATTTTACAG
TGACAGCTAATCCAGAATATACTCTCATAATCATATTCATTAATTCCCAA
TTCCATATCTTACCAGAGAAAGAAGCCATTGCTTTGTCTTCATATATGTT
TTGAATGAATGGAATAATTCTTCTAGAACACTGGTTTATGCCAGGCCTTT
TTCTGTAACAAAGTCTGTGATGTTTGTTGGAATTGACGTATACTTATGAA
TTTACAAGCTGGAGGTATTGGAGCATACCAGGAGCACTCTCCTAAAAGCA
GAGGTAGGGGGGATTAGAAAGGGGGTTTCTGGAGGAGAAACTGGGAAATG
TTTGAAATATTAATAAAGAAAATATCCAATTCATAATAGAGTAAAAACAA
GGTAGAATTAATTTCCATTTTCTTTATTTCTGTGAACATTGAACACCGTT
TTGTCTTTCCTAGCCATTTATTTATTATTATTATTATTATTATTATTATT
ATTATTATTATTATTATTATTATTATTTACTTTGAGAAATCTCAGTGAAG
ATCTATAGTTCATTTTTTTTGATTGGATGCTTTTGTTTATTCTAGATAAA
TACCTGTGATATATAATGTGTCGATTATATTGAAAATAAAGGCCTAAGCT
GGGTGTGGTGGAACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG
GTGGATTTCTTAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCGGGT
CAGCCAGGGCTACACAGAGAAACTCTGTCAAAAAAAAAAAGAAAAACGAA
GGGAAGAAAGAATAGAACAGAAAAGAAAAGAAAAGAAAAGAAATGATAGG
AAAGCAAAGAATAGATAAGAAACGAAAAGAGAGCATAATGGCCTAATTAG
AAACTTGCTTCAATTTTTTAACGAAAAATTTGGCTGTTTTTATTCTCAAT
TAACCGTTTTAATAAAATTTAATTTGCCTAATTTTGGCAAACCAAAAGCC
CTAACTTTATTTTAACCTCCGGCGGAAAATTTTGAAAATTTGGGCACCAA
ATTTTCTTCCTATCCTGGAAAACACTTATATGGCCTTGGTCTTCCCAGGG
GTTTTTCTTTTTCTCTTAAACCTTCTCCTTTAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_i04.g1 MSMg01no124_i04.g1 CHROMAT_FILE:
MSMg01no124_i04.g1 PHD_FILE: MSMg01no124_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:42 2005
         (698 letters)



>mm_chr5_83952179_83953275
          Length = 1097

 Score = 1255 bits (649), Expect = 0.0
 Identities = 682/701 (97%), Gaps = 16/701 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaataaataattttttgtcaatgtggagacctttt---tcaaattctataatggaatg 57
           ||||||||||||||||||||||||||||||||    |   ||||||||||||||||||||
Sbjct: 201 agaaataaataattttttgtcaatgtggagac----taaatcaaattctataatggaatg 256

                                                                       
Query: 58  gagaaattttacagtgacagctaatccagaatatactctcataatcatattcattaattc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagaaattttacagtgacagctaatccagaatatactctcataatcatattcattaattc 316

                                                                       
Query: 118 ccaattccatatcttaccagagaaagaagccattgctttgtcttcatatatgttttgaat 177
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccaattccacatcttaccagagaaagaagccattgctttgtcttcatatatgttttgaat 376

                                                                       
Query: 178 gaatggaataattcttctagaacactggtttatgccaggcctttttctgtaacaaagtct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaatggaataattcttctagaacactggtttatgccaggcctttttctgtaacaaagtct 436

                                                                       
Query: 238 gtgatgtttgttggaattgacgtatacttatgaatttacaagctggaggtattggagcat 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgatgtttgttggaattgacgtatacttatgaatttacaagctggaggtattggagcat 496

                                                                       
Query: 298 accaggagcactctcctaaaagcagaggtaggggggattagaaagggggtttctggagga 357
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 accaggagcactctcctaaaagcagagggaggggggattagaaagggggtttctggagga 556

                                                                       
Query: 358 gaaactgggaaatgtttgaaatattaataaagaaaatatccaattcataatagagtaaaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaaactgggaaatgtttgaaatattaataaagaaaatatccaattcataatagagtaaaa 616

                                                                       
Query: 418 acaaggtagaattaatttccattttctttatttctgtgaacattgaacaccgttttgtct 477
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 617 acaaggtagaattaatttccattatctttatttctgtgaacattgaacaccgttttgtct 676

                                                                       
Query: 478 ttcctagccatttatttattattattattattattattattattattattattattatta 537
           ||||||||||||||||| ||        ||||||||||||||||||||||||||||||||
Sbjct: 677 ttcctagccatttattt-tt--------tattattattattattattattattattatta 727

                                                                       
Query: 538 ttattattatttactttgagaaatctcagtgaagatctatagttcattttttttgattgg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttattattatttactttgagaaatctcagtgaagatctatagttcattttttttgattgg 787

                                                                       
Query: 598 atgcttttgtttattctagataaatacctgtgatatataatgtgtcgattatattgaaaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 atgcttttgtttattctagataaatacctgtgatatataatgtgtcgattatattgaaaa 847

                                                    
Query: 658 taaaggcctaagctgggtgtggtggaacatgcctttaatcc 698
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 taaaggcctaagctgggtgtggtggaacatgcctttaatcc 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space:   747856
Effective search space used:   747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)