BAC Information

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BAC

Clone NameMSMg01-124M02
Chromosome5 (Build37)
Map Location 30,201,484 - 30,202,183
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662
Downstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124M02.T7 (MSMg01no124_m02.b1)MSMg01-124M02.TJ (MSMg01no124_m02.g1)
ACCAG334028AG334029
length1,2741,181
length of high quality
(start - end)
423 (33 - 455)698 (118 - 815)
definitionCHROMAT_FILE: MSMg01no124_m02.b1 PHD_FILE: MSMg01no124_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:16 2005CHROMAT_FILE: MSMg01no124_m02.g1 PHD_FILE: MSMg01no124_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCGCCAGCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGG
AATTCCATGTCTGCCTAAGTGCTGCCATGCTCCCTGCCATGAGGATTGTG
GGTCTCCTTCTGCCCAGGGTCATTGGCCACCAGCCCACAAGGACAAAGGG
AGCACACTCAACTAACAGGGTTTAAAAAAGCTAGACAGGGTTTAGTGAGC
TTGAATGGAAATAATGACATTTCAGGATCAGCTTTCAAGAGACAGATCAA
CTTTATACAGGTGACTCAAGGGTAATATTGAAGGGCTATCAATATCCAGG
GTAAGCAAACGTCACTGGCGAAAGGCTAGAGTACCTAGATGCCTCATTAC
CATGGGGAGGCAGTCCCAGAATTCAGGTGCTTCCAATACAATCTCACCTA
GGTTATGTTACATTCTGCTGGTAGCGGTTGGAAAGATTTCAGGCTTCTCA
CATAATTTTTTTTTCCCCCCCCCGTCCCACTGGTCCCCCCCCCCCAAAAA
AAAGGGGCGAGCTCAGCGATTCCGGGTAGTGGCAGACTCAGATCTTAGCT
AGCAGGGCTCAGCATAGGATAATGAACTTAACCCTCTGACACCGTGAGCA
AGCCCCAATTAAACGCTTTCTTTATACGTTACTATGATTGTGGCTTCTTT
TCCCAGCAATAGAACAGACTGAGGCACCACATGTCCCTTCTCTTCTCCTA
GGGGTAAGGGACATGATTCTTTTTTTTTTAAAGACTTACCTTATTTTATT
ATATATCGGTACCTGGTACGCTGTCTTCAGACCCTCCCGAAAAAGCTCAC
CAGATCTTATTACCCTTGGCTGTGACCCACTGCTTTCTATCTGGCGCGTG
AAAAGCGCCCTCCTGTCTTCTCTGCCCCCCCCAGGTCGCCATTTACTAGG
CCCGCTCTTCCCTCTTCCTTTTCAACTATTTCATCCTCCCTGGTGCCCCC
TGCCTTCCCCATATTCACTTTCGCTCAACCTATGCCTTGTGACACCAAAC
CCTTCCCATGTATCTCCCGCCCCCTTGCTCTTCCCACACCTCCTCTTCAT
CCCCCACCCCCTTTCCCCCACAACCACAATCCCTCCCTACATAAATCCCG
TCATTTCCCAGACGCCACTCCTTCCTTCTCTCCCCTCACTCACCTCTCCC
TCCAACATATTCCCCTCTCCTTCTTCTACCTAACGCAATCCCCTTCCGCA
CTCACATCACCCCACGCTTCTCCTAATCTTCCTCTCTACCACCTATCTCT
ACTCATCCTCACATCCCACATAAC
TTTTTAACCAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTAAAAAGACCATTGTCTGACTCACTCCTTC
CTGTCCACCCTTATACAGTCCGTGTGTCTCCTTAACCAGCTCTTCTCCAT
TCATCCAATCTGAAACATCTCTGCTGTGGATCTTTGTCTCATGACTTTCA
TTTTCTTATAGCCCATGGCCCATCCTGAGATGTCTTGCCTAGTTTAGAGA
AACTGCATCACTGCTTGAATTGTTTTCTGCCTGCACAGACAGGCTAAGGA
GAAAATGTCCCTCAAGGAGAGATAATAAGTTACAAAGCAGTATTTGGCAT
GGTCCTTGTGATACTCATAACACACATATATGTTAGGTGAATCATGCTTT
GTAAAAGTGTCTGAGAAATGGCTAGGTAAAAAAAATAAATAGGCACACAT
ATAAAGAGTGCCTCTTCCTGGGAATAGGATTATAAATATACTTTTCCTCT
ACATTTACTTGAACAGTTTGTGTCCGTATATAATCAATCAATTACATTAA
TTGTACTCAGAAAACAAAATCAAGCTATTTCTGTTTTTAAAAGAAGAAAA
CCAGGTATAGCTATAAGAAATCTGATGCTTAAAAAGAAGTGCATCACAGG
ATCTGAACCAATGACTGACAAAAAGAACTACACGTGACTTTAAAAACAAA
AGGCTTTCCTGGTTACACCAGGCTATGTGCTCACATCTGAAGATTTGGAC
TTAGGAGCCTCAAATGGGAGAAAGCATGTAGCGTTTGCCTTTCAGTTCCA
TGCATGTACCTGAAAAGTTCATGTTTGGATTTGTTTTTTGTTTTTGTTTT
ACAGCTGAATAGTACAATATATATGTACCACGCTTTCATTATCCACTTGT
CAACTGAAAGGCATCAAAATTGTTACCACTTCCCAGCTATTGAAAAAAAA
TGGCAGTGAATCCCTATGGAGAATTGGCAAATTTCCTTGGACACAACTGA
ACCTAATAATAACTTTTTTAAAAATTCTCCACCTACTTTTCCAAAAGGGT
TGTACCACTTTCCTAATCCCAAAACTGGAAAAAGGGGTTCTTTTTTCTCC
CCCATTCTTTTCAAAAAATTGGGGGTGGAAAAATCCTTAAACCTTGCCCC
CCCCAAAAGGGGAAAAAAAAAAAATCTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_m02.g1 MSMg01no124_m02.g1 CHROMAT_FILE:
MSMg01no124_m02.g1 PHD_FILE: MSMg01no124_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:16 2005
         (698 letters)



>mm_chr5_30201396_30202495
          Length = 1100

 Score = 1272 bits (658), Expect = 0.0
 Identities = 689/700 (98%), Gaps = 2/700 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccgtgtgtctccttaaccagctcttctccattcatccaatctgaaacatctctgctgt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 788 gtccgtgtgtctccttaaccagctcttctccattcacccaatctgaaacatctctgctgt 729

                                                                       
Query: 61  ggatctttgtctcatgactttcattttcttatagcccatggcccatcctgagatgtcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggatctttgtctcatgactttcattttcttatagcccatggcccatcctgagatgtcttg 669

                                                                       
Query: 121 cctagtttagagaaactgcatcactgcttgaattgttttctgcctgcacagacaggctaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 668 cctagtttagagaaactgcatcattgcttgaattgttttctgcctgcacagacaggctaa 609

                                                                       
Query: 181 ggagaaaatgtccctcaaggagagataataagttacaaagcagtatttggcatggtcctt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggagaaaatgtccatcaaggagagataataagttacaaagcagtatttggcatggtcctt 549

                                                                       
Query: 241 gtgatactcataacacacatatatgttaggtgaatcatgctttgtaaaagtgtctgagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtgatactcataacacacatatatgttaggtgaatcatgctttgtaaaagtgtctgagaa 489

                                                                       
Query: 301 atggctaggt--aaaaaaaataaataggcacacatataaagagtgcctcttcctgggaat 358
           ||||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 488 atggctaggtaaaaaaaaaataaataggcacacatataaagagtgggtcttcctgggaat 429

                                                                       
Query: 359 aggattataaatatacttttcctctacatttacttgaacagtttgtgtccgtatataatc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggattataaatatacttttcctctacatttacttgaacagtttgtgtccgtatataatc 369

                                                                       
Query: 419 aatcaattacattaattgtactcagaaaacaaaatcaagctatttctgtttttaaaagaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatcaattacattaattgtactcagaaaacaaaatcaagctatttctgtttttaaaagaa 309

                                                                       
Query: 479 gaaaaccaggtatagctataagaaatctgatgcttaaaaagaagtgcatcacaggatctg 538
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gaaaaccaggtataactataagaaatctgatgcttaaaatgaagtgcatcacaggatctg 249

                                                                       
Query: 539 aaccaatgactgacaaaaagaactacacgtgactttaaaaacaaaaggctttcctggtta 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaccaatgactgacaaaaagaactacacgtgactttaaaaacaaaaggctttcctggtta 189

                                                                       
Query: 599 caccaggctatgtgctcacatctgaagatttggacttaggagcctcaaatgggagaaagc 658
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 188 caccaggctatgtgctcacatctgaagatttgtacttaggagcctcaaatgggagaaagc 129

                                                   
Query: 659 atgtagcgtttgcctttcagttccatgcatgtacctgaaa 698
           ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 128 atgtaacgtttgcctttcagttccatgcatgtacctgaaa 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1100
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1090
Effective search space:   749920
Effective search space used:   749920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)