Query= MSMg01no125_b05.b1 MSMg01no125_b05.b1 CHROMAT_FILE:
MSMg01no125_b05.b1 PHD_FILE: MSMg01no125_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:00 2005
(621 letters)
>mm_chr5_17934652_17935673
Length = 1022
Score = 1013 bits (524), Expect = 0.0
Identities = 597/624 (95%), Gaps = 14/624 (2%)
Strand = Plus / Plus
Query: 4 aattctgcctctctatcggaaagaaatctaagagtgttcagttgtacccattgttcccag 63
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aattctgcctctctagaggaaggaaatctaagagtgttcagttgtacccattgttcccag 263
Query: 64 gcaaagtaggcatctatatattttagtggcttaaacatagagtgggcagtctgttggtca 123
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaaagtaggcatctatatattttggtggcttaaacatagagtgggcagtctgttggtca 323
Query: 124 cttatttacattttattttgaataaaaa-gaaatatttactttgcagcacagagttattt 182
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 324 cttatttacattttattttgaataaaaaagaaatatttcctttgcagcacagagttattt 383
Query: 183 tagtgattctttatttttaaaacatttattttttatatatttgaatacactgtagctatc 242
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 384 tagtgattctatatttttaaaacatttattttt-atatatttgaatacactgtagctaac 442
Query: 243 atcagacacaccagaagagggcctaagattccattatagatggttgtgagccaccatgtg 302
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcagacacaccagaagagggcataagattccattatagatggttgtgagccaccatgtg 502
Query: 303 gtttctgggaattgaactcaggaactctgcaagagcagccagtgcttttaactgctgaga 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 503 gtttctgggaattgaactcaggaactctggaagagcagccagtgcttttaactgctgaga 562
Query: 363 catctctccaacccctatttcagtgactctaaaa-aaaaaaaaaaaagaaagaaagaaag 421
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 563 catctctccaacccctatttcagtgactcaaaaagaaaaaaaaaaaagaaagaaagaaag 622
Query: 422 aaagaaagaaagaaagaaagaaagaaa-gaaa-gaaa-gaaa-gaaaagaagaagagaaa 477
||||||||||| ||||| ||||| |||| |||| |||| |||||||| |||| |||
Sbjct: 623 aaagaaagaaa---agaaa---agaaaagaaaagaaaagaaaagaaaagaa-aagaaaaa 675
Query: 478 agaaaaaaggaggaagataaaatgctatttcttctgggaagtaatatatctagaagagaa 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 676 agaaaaaaggaggaagataaaatgctatttcttctaggaagtaatatatctagaagagaa 735
Query: 538 ttaggataagagggtacatgatatttaacaaagataaaagaatgagaatctgtattatgt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttaggataagagggtacatgatatttaacaaagataaaagaatgagaatctgtattatgt 795
Query: 598 gtctcatgtgatgtaaccaataat 621
||||||||||||||||||||||||
Sbjct: 796 gtctcatgtgatgtaaccaataat 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_b05.g1 MSMg01no125_b05.g1 CHROMAT_FILE:
MSMg01no125_b05.g1 PHD_FILE: MSMg01no125_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:00 2005
(519 letters)
>mm_chr5_18102842_18103760
Length = 919
Score = 366 bits (189), Expect = e-105
Identities = 212/223 (95%), Gaps = 7/223 (3%)
Strand = Plus / Minus
Query: 1 aagaaaagctaaatgagtgggcattctcgcaaggaa------ttcttaattaaatcattt 54
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 501 aagaaaagctaaatgagtgggcatgctcgcaaggaattctttttcttaattaaatcattt 442
Query: 55 gaagtgaggatccacttctaatccgcaattttgagtgggaagatacacatttcatcctga 114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 -aagtgaggatccacttctaatccgcaattttgagtgggaagatacacatttcatcctga 383
Query: 115 tcttttgaagtggggaaatctactgttaatctggaccacaacggtctgctagcagcctat 174
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 382 tcttttgaagtggggaaatctactgttaatctggaccacaagggtctgctagcagcctat 323
Query: 175 ataaaggactgctttgatcctgctagcaaatccattccgtcat 217
||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 322 ataaaggactgttttgatcctgctagcaaatccattccatcat 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
