BAC Information

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BAC

Clone NameMSMg01-125N01
Chromosome5 (Build37)
Map Location 81,407,503 - 81,558,421
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125N01.T7 (MSMg01no125_n01.b1)MSMg01-125N01.TJ (MSMg01no125_n01.g1)
ACCAG334803AG334804
length707704
length of high quality
(start - end)
629 (76 - 704)626 (76 - 701)
definitionCHROMAT_FILE: MSMg01no125_n01.b1 PHD_FILE: MSMg01no125_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:58 2005CHROMAT_FILE: MSMg01no125_n01.g1 PHD_FILE: MSMg01no125_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,557,799 - 81,558,421)(81,407,503 - 81,408,128)
sequence
NCCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTTATAATACCAAAACAAAATACACTTTGAGGCATCTT
GACAAATGAAGTGACAGGAATCCTTCTTGTGACCTCAAGGAAGCATGGCA
TCACTTCAGCAATGCCTTCACCCACAGAGTCAGTATGCAGCTTTCCCTGA
TGGCTGTCCTAAGCATGACCTCGTGACCTGCTCAGATTCTTGTAGGGTTT
TGTTTTTAATCGAATTACTTTGTAGTTATGACTTGGGATCTAAGCCATCA
GTCCAAATTTTGTTTTTCTATGTGTATTTTTTAAAAATCACCAACAATCA
GTATAATGATACATCTTGCTGGACTTCTCTGAATGCAAATAACCAAAATC
TCTAAAAGGATTCTACAATACATGGAATTCTGTGCAAGAAGTGAATGCCT
ACGTGCACCAACTTTCCAACTTTCGTTTTAAAAGTTCTGATGATTCTTTA
AAGGGAATTGCTACCAACCCTGAGGTCCTGGGAGAATTACTTGGGCCCCA
TGGTTGAAGGACAGTACACACTCTCACAAGTTGTCCTCTCACTTTCATTC
ACATGCTATGGTACATAGTGTGTGTATATGTGGACATGCAAGTGAGCTTG
TGTACATGTGTACGTGTCCACGCGTGTTTGCATGTGCGCGTGCACGCACA
CAAACAT
NCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGGAATCATCATGGGTCCCAAAG
AACTTCTATTTATACGCATTACATGTATGTTATAGAAATTAAATCTGGAG
AGTTTGTAATAGATTGTGTGTTTTACTTTTTTGAAGATAAAGGAATAAAC
GTGTGTCTTGTCAGGTGGCACAAGCAAGAAATATTAGCTGCTTAGGAGGC
TGAAGGACCAGGATGTAGGCAGAGAACAAATTAGTGATATGTATCCTCCC
AAAACAGTAAGAGATTGCCTGGGATACAGTACACTGTTGGTACTTGCCTG
GCATGCTTGAAGACTTAGGTTCAAACTCCAGTTCTTCTGTAAAAATAAAC
CCCAAAATACATTTGTGTCTTGTTAGTTAATTAAGAGATATCCTAATGTA
TGAGTTTGTGCATTCTAGAATATAAAACACATGATATGCAAAAAAGCAGA
ATTTTATTTTCACTGGATTATTATACCAAAGCTTGAAAAGACCATAAAAT
GTGGTTTTAGTAGCCATGTTGTCCATCCTATTTAGCTTCCTTCCCCAGTT
TTCCAGCTACCTTACCTACCATGTAAAAGTTGATTCTAATCTTTCCATAG
TCCTTATAGAANAAGGGAATAAAAACAAAAGTTCTTACTCATCAAAGGGT
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_n01.b1 MSMg01no125_n01.b1 CHROMAT_FILE:
MSMg01no125_n01.b1 PHD_FILE: MSMg01no125_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:58 2005
         (629 letters)



>mm_chr5_81557799_81558827
          Length = 1029

 Score = 1174 bits (607), Expect = 0.0
 Identities = 619/623 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaaatacactttgaggcatcttgacaaatgaagtgacaggaatccttcttgtgacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aacaaaatacactttgaggcatcttgacaaatgaagtgacaggaatccttcttgtgacct 564

                                                                       
Query: 61  caaggaagcatggcatcacttcagcaatgccttcacccacagagtcagtatgcagctttc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 caaggaagcatggcatcacttcagcaatgccttcatccacagagtcagtatgcagctttc 504

                                                                       
Query: 121 cctgatggctgtcctaagcatgacctcgtgacctgctcagattcttgtagggttttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctgatggctgtcctaagcatgacctcgtgacctgctcagattcttgtagggttttgttt 444

                                                                       
Query: 181 ttaatcgaattactttgtagttatgacttgggatctaagccatcagtccaaattttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaatcgaattactttgtagttatgacttgggatctaagccatcagtccaaattttgttt 384

                                                                       
Query: 241 ttctatgtgtattttttaaaaatcaccaacaatcagtataatgatacatcttgctggact 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctatgtgtatttttttaaaatcaccaacaatcagtataatgatacatcttgctggact 324

                                                                       
Query: 301 tctctgaatgcaaataaccaaaatctctaaaaggattctacaatacatggaattctgtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctctgaatgcaaataaccaaaatctctaaaaggattctacaatacatggaattctgtgc 264

                                                                       
Query: 361 aagaagtgaatgcctacgtgcaccaactttccaactttcgttttaaaagttctgatgatt 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 aagaagtgaatgcctacgtgcaccaactttccaacttttgttttaaaagttctgatgatt 204

                                                                       
Query: 421 ctttaaagggaattgctaccaaccctgaggtcctgggagaattacttgggccccatggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctttaaagggaattgctaccaaccctgaggtcctgggagaattacttgggccccatggtt 144

                                                                       
Query: 481 gaaggacagtacacactctcacaagttgtcctctcactttcattcacatgctatggtaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gaaggacagtacacactctcacaagttgtcctctcactttcattcacatgctatggtaca 84

                                                                       
Query: 541 tagtgtgtgtatatgtggacatgcaagtgagcttgtgtacatgtgtacgtgtccacgcgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 83  tagtgtgtgtatatgtggacatgcaagtgagcttgtgtacatgtgtacgtgtccacgagt 24

                                  
Query: 601 gtttgcatgtgcgcgtgcacgca 623
           |||||||||||||||||||||||
Sbjct: 23  gtttgcatgtgcgcgtgcacgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no125_n01.g1 MSMg01no125_n01.g1 CHROMAT_FILE:
MSMg01no125_n01.g1 PHD_FILE: MSMg01no125_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:58 2005
         (626 letters)



>mm_chr5_81407303_81408328
          Length = 1026

 Score = 1158 bits (599), Expect = 0.0
 Identities = 619/626 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggaatcatcatgggtcccaaagaacttctatttatacgcattacatgtatgttatag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttaggaatcatcatgggtcccaaagaacttctatttatacgcattacatgtatgctatag 260

                                                                       
Query: 61  aaattaaatctggagagtttgtaatagattgtgtgttttacttttttgaagataaaggaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 aaattaaatctggagagtttgtaatagattgtgtgttttactttttcgaagataaaggaa 320

                                                                       
Query: 121 taaacgtgtgtcttgtcaggtggcacaagcaagaaatattagctgcttaggaggctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacgtgtgtcttgtcaggtggcacaagcaagaaatattagctgcttaggaggctgaag 380

                                                                       
Query: 181 gaccaggatgtaggcagagaacaaattagtgatatgtatcctcccaaaacagtaagagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gaccaggatgtaggcagagaacaaattagtgatatgtatcctcccaaaacagtaagagaa 440

                                                                       
Query: 241 tgcctgggatacagtacactgttggtacttgcctggcatgcttgaagacttaggttcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tgcctgggatacagtacactgttggtacttgcctggcatgcttgaagacctaggttcaaa 500

                                                                       
Query: 301 ctccagttcttctgtaaaaataaaccccaaaatacatttgtgtcttgttagttaattaag 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ctccagttcttctgtaaaaataaaccccaaaatacatttgtatcttgttagttaattaag 560

                                                                       
Query: 361 agatatcctaatgtatgagtttgtgcattctagaatataaaacacatgatatgcaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatatcctaatgtatgagtttgtgcattctagaatataaaacacatgatatgcaaaaaa 620

                                                                       
Query: 421 gcagaattttattttcactggattattataccaaagcttgaaaagaccataaaatgtggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagaattttattttcactggattattataccaaagcttgaaaagaccataaaatgtggt 680

                                                                       
Query: 481 tttagtagccatgttgtccatcctatttagcttccttccccagttttccagctaccttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttagtagccatgttgtccatcctatttagcttccttccccagttttccagctaccttac 740

                                                                       
Query: 541 ctaccatgtaaaagttgattctaatctttccatagtccttatagaanaagggaataaaaa 600
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 ctaccatgtaaatgttgattctaatctttccatagtccttatagaaaaagggaataaaaa 800

                                     
Query: 601 caaaagttcttactcatcaaagggtt 626
           ||||||||||||||||||||||||||
Sbjct: 801 caaaagttcttactcatcaaagggtt 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)