BAC Information

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BAC

Clone NameMSMg01-127D04
Chromosome5 (Build37)
Map Location 83,023,157 - 83,023,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127D04.T7 (MSMg01no127_d04.b1)MSMg01-127D04.TJ (MSMg01no127_d04.g1)
ACCAG335808AG335809
length715710
length of high quality
(start - end)
374 (50 - 423)528 (76 - 603)
definitionCHROMAT_FILE: MSMg01no127_d04.b1 PHD_FILE: MSMg01no127_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:52 2005CHROMAT_FILE: MSMg01no127_d04.g1 PHD_FILE: MSMg01no127_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCTTGCACCTGCGTACAGGACTTGTTTACTAGTTAGGCA
CAGCGGAGGCCCGCGCCATCTTATAATGGCCACTGCTCGCGGCACACACG
GCTCTCCTCAGAGATTACTCGGCGGCACACATGCGATTGCTCGCAGCACG
TACCGGCTCTCCACAAGTTTAAATTGAGAAAGGAAAATAGACAAAGGATA
AAGAACGAAAAATGTTGAGGGAAACTTCCTTGTTATACCAATCTTGCACC
AAAATGCTTCTATGTATAGATACCGGGAGAGAAGTAAAATGCACACAATA
CCTACACATGTTATTTAGCTTTAAATTGGCGGAAGCCAGAAATCAGCATG
CAAGAGAAGCTTTTATTTATTTCAAAAATCACAAGAATATAATTTTTGTC
TGTGTTTAGCACATGTGGAGTAGATAACACATTACAAGCTTATAAAAAAG
ACCATTTACATGTGCTTTCATTTTAGCAAGTAAATTTCACATATCCCATA
CCAGTGAACAACGCCAAATACAAGGACGAGGAACAATAACCGTTTCTCCC
CACTTAGTATATATTGTTGCATGTTGAGGGATCTCCACTACCTTGTGAAA
CACGAATATTATCCTGTAGCCAAAAATGACCCCATGACTATCTACCCCTT
TTTGTACTAAATACC
NCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCGGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTTGCGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGATATAATACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTATACAATGGATTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTTAGGATAACCAGATATAAGATACTATTTCC
TAAACACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_d04.b1 MSMg01no127_d04.b1 CHROMAT_FILE:
MSMg01no127_d04.b1 PHD_FILE: MSMg01no127_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:52 2005
         (374 letters)



>mm_chr5_83022791_83023564
          Length = 774

 Score =  333 bits (172), Expect = 1e-95
 Identities = 199/208 (95%)
 Strand = Plus / Minus

                                                                       
Query: 167 agtttaaattgagaaaggaaaatagacaaaggataaagaacgaaaaatgttgagggaaac 226
           |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 574 agtttaaagtgagaaaggaaaacagacaaaggataaagaaagaaaaatgttgagggaaac 515

                                                                       
Query: 227 ttccttgttataccaatcttgcaccaaaatgcttctatgtatagataccgggagagaagt 286
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 514 ttccttgttatatcaatcttgcaccaaaatgcttctatgtatagatacagggagagaagt 455

                                                                       
Query: 287 aaaatgcacacaatacctacacatgttatttagctttaaattggcggaagccagaaatca 346
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 454 aaaatgcacacaatacctacacatgttgtttagctttaaattggtggaagccagaaatca 395

                                       
Query: 347 gcatgcaagagaagcttttatttatttc 374
           ||||| ||||||| ||||||||||||||
Sbjct: 394 gcatgtaagagaaacttttatttatttc 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)