BAC Information

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BAC

Clone NameMSMg01-127F12
Chromosome5 (Build37)
Map Location 104,946,080 - 104,946,274
singlet/doubletsinglet
Overlap geneBC005561
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2
Downstream geneLOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127F12.T7 (MSMg01no127_f12.b1)MSMg01-127F12.TJ (MSMg01no127_f12.g1)
ACCAG335912AG335913
length868742
length of high quality
(start - end)
---195 (78 - 272)
definitionCHROMAT_FILE: MSMg01no127_f12.b1 PHD_FILE: MSMg01no127_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:03 2005CHROMAT_FILE: MSMg01no127_f12.g1 PHD_FILE: MSMg01no127_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCAGAGGAGCCT
GTGGAATTCTCATTTGTTCCCATATAAAATGCGCTGATACGCAACTGAAT
ATATTTTTTAGTACCCATTAATCATCTTCGGCCCCGCATATCAATATTTA
TCTTTGATATTCCACCATTATTTCTGCTTACTATCGCGCTAAGATTCTAC
AATATCTCGCTGTCTGCAACACGCTAGGTTAGTTACGTGCGAGAATGTGT
TAACACCTTATCCATACGCCCGGTGTCAACTGCAAGTTTCAGTACCACCA
TTTCTTGTATTTTTTCTCCGCTCGAAATCCTTACTCAAATCGATAAACAT
TCCATTACCGTTATGATCCTCGCTTCTTTTTTTCACCGTTTCACCCACTT
TGCATTTTGTTTTCATCCTGACTCACGATTGTAATTTGTCTTCTTTTCTG
TCTCTTTTGCCCCTCTGCCCCCTACTATCATTGCTTAATTTTCGTCCTCG
ATTCTATGTCGTTTCTTCCTTCTTTCACACCTTTGCCCCCGTTTTTTTCC
CTTTTTCCCCCTATTCTTCCATTTGTTATTTATCTAATCATTTTTTTACC
AATCACGAAATATGAACTCTCTTTTTTACCCATTTACTCCAACTCGTTAG
ATGTATCTGACCCCGTTCATTCATTTTAGCTTTGTTCCACATGTTTCCCC
ACTTTCCACCGCCCCCTCCACTCCCCAACCGTTATTCCCCCTGCGTCTTT
TTGTTAAATCCCCACTTACACTTTATTTATTACCCTCCTTCTCCTGTATC
CCCTTCCACCCTTTTTTTTTACCCCGTTTCCGCTTTCCTTTGCTCCCCGA
ACAGCTAATTCTTTTCAC
TTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGGGGAACTGAGACACATCC
CTTAGTGTTTGTAGGAAGAATAACGAGATCACAGGTTCAGGATGAGGAGA
TAGATGTCAAGGCTAATGTGGAATTCTAAAGACAGCCACAGGGTCTACTG
AATATCCTGTCGGAGTCAGCTGTTTCACATAAGATGATATGAAGACTATA
GGATTTGTTTGTAAGCCAAATAGAAGTAAGAACTAGAAATATGGTGGTGG
GGAAAGAATGTAAGAATATGATATTATCCGTTCCCTTTTCCCCTTTCCCC
CTCTTCCTCCCTTTTCCCCCTCTTTCCCCTTTTTCCTTCCCCTTTCTTTT
CTTTTTCCCCCATCGTTTCCCCCCCCCCCCACCTTATCCCTCTTCTTTTC
TTCTCTCTCTTTTCCTCTCCCTCTTTATACTTCTCCCACTCTTCCCGTTT
CTACTTCCCCCTTATTTTCCTCCTTCCCCCTCTCCTTCCCCTTTTCTCCC
TCCCTCCCTTCTCCTTCCCTTTTTTTCTCCCTTTTCCTTCTTTTCCCCTT
TCTTCCCTCATTACACTATTTCCTTTCTCCCCTTTTTTCCCTCCCCCTTT
TTCCCCTTTTTTCTCCCCCCTCTACCTCTTTTTCATCCCTTGTTTCCTTC
TTTCACCTGCTATCCTTTCCCTATTTTCCTTCATTTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_f12.g1 MSMg01no127_f12.g1 CHROMAT_FILE:
MSMg01no127_f12.g1 PHD_FILE: MSMg01no127_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:03 2005
         (195 letters)



>mm_chr5_104945880_104946474
          Length = 595

 Score =  339 bits (175), Expect = 9e-98
 Identities = 190/195 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctggggaactgagacacatcccttagtgtttgtaggaagaataacgagatcacaggtt 60
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 201 acctggggaactgagacacatcccttaatgtttgtaggaagaataaggagatcacaggtt 260

                                                                       
Query: 61  caggatgaggagatagatgtcaaggctaatgtggaattctaaagacagccacagggtcta 120
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 261 caggatgaggagatagatgtcaaggctaatgtggaattctaaagatggccacagggtcta 320

                                                                       
Query: 121 ctgaatatcctgtcggagtcagctgtttcacataagatgatatgaagactataggatttg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaatagcctgtcggagtcagctgtttcacataagatgatatgaagactataggatttg 380

                          
Query: 181 tttgtaagccaaata 195
           |||||||||||||||
Sbjct: 381 tttgtaagccaaata 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)