BAC Information

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BAC

Clone NameMSMg01-127F24
Chromosome5 (Build37)
Map Location 119,312,640 - 119,312,891
singlet/doubletsinglet
Overlap genenone
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Downstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127F24.T7 (MSMg01no127_f24.b1)MSMg01-127F24.TJ (MSMg01no127_f24.g1)
ACCAG335936AG335937
length731721
length of high quality
(start - end)
56 (239 - 294)252 (71 - 322)
definitionCHROMAT_FILE: MSMg01no127_f24.b1 PHD_FILE: MSMg01no127_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:05 2005CHROMAT_FILE: MSMg01no127_f24.g1 PHD_FILE: MSMg01no127_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATACTCACAATAGCGGCGCAAAGGAANACTACTTTCTGACGCCGACGGA
ANNNNNNCNCTTTTCCCGCACCGGGGGGNNNNANNAANAANNGNNNAAAA
GAGNGAGCANAGAGCTGTTCCCCCAGCACAAACAGACCCCAAACACACGG
AACGCGGCAAGCCCCCAAACNCAGGACAAACAACGAAGGCCCGCGACCGC
AAGACACAACCACGAACCCACCCTTACAAGCGAGGCTGCACCTACATGGA
CTGTTTTGTTGCTGTGCAAGTCTTCCCAAGCGGCGTGCACATTCATCATG
TCTATTGCCACACGGCTTTTTTATTTAANCCCACAGACCCCGGCCACAAC
ACGGCGGCGGATTTGCCCCCCCCGCGCGCGAGGAGCNGAGGGCACCCCCC
CGGCGCCAGCCCGCCCCCCCCACCAAAACAAAAACCACACCCGCGACCCC
CGACCCCCAANGACCCACGAACCCCCCACCGCCCCAGGCACCCCCACCAC
CCGGAGCAACCACCAACCACAAACCCACGGACCCCAAACCACCACCCAAA
ACACGCACCACCACCCGCCAGGGCCCAACACCCCACACCCCCGAGCCCCC
CCCCCCCACACACCCCAAGGACCCCCCCCAGAGAGCCACCCACCACCAGA
CAAGACGCCCCCCACCCCCGCACCCAACACCCTCAATTTTTTTTTTCCCC
TCCATCTCCCCCCACAACCATCAAAGTACCN
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGCCTAACTCAAGGCCTGGAGAGAATC
CAGAGAATTGGTGACCACCAGCAAGACAGCAATAACGGGAAGGCTGTGTG
TGAGAGAAGTCAAAAGGAGGCAGCCAAAGCTGTAGTCAGTAGCAAATTCC
TAGTACTTCAAGTAAAAGGTAAGAATAAAGAGCCACAGGGCCATTAAGGA
AGGTGGCAGCAAAATGCAAGAGAAGAGACCATGGGTTTAAAGTTTTAACA
CCCAAAGGAGACGGAGGAAGCTCCTGTAAGAAAAAGGAGAATGACACTCA
TAATTCAGAGTAAGGCAAGTAAGCAGAATTGCAGCATAGACAGGAAAAAT
TCAATGGGCCCAAACCCTACCCCAAGATATGTGCTCGATCCAGAAGAGCA
AAGTTGCCATACTGAGACTGTTCTCACTGGTTCTATATGAAGCCTGATGG
GCCAGAAACAGGAGAAGAAAACAGGAGTCCGTGGCAGATAGATGATTAGG
GGTAAGCACAGGAGTCAGGATGGACGGAGGAGTCGGAGGTATGCGTATGG
AAATCACCCTTTGATGTCCTACAATATAAGCAAAGAACTCATATCGAAGT
CAGCGCGCTTTTGCCAAATTACTGCTGGTTGCTCCGTCTCCTGTTCGCGT
GGTGCTTACATTAGCTCGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_f24.g1 MSMg01no127_f24.g1 CHROMAT_FILE:
MSMg01no127_f24.g1 PHD_FILE: MSMg01no127_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:05 2005
         (252 letters)



>mm_chr5_119312440_119313091
          Length = 652

 Score =  441 bits (228), Expect = e-128
 Identities = 246/252 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggcctaactcaaggcctggagagaatccagagaattggtgaccaccagcaagacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tctggcctaactcaaggcctggagagaatccagagaattggtgaccaccagcaagacagc 393

                                                                       
Query: 61  aataacgggaaggctgtgtgtgagagaagtcaaaaggaggcagccaaagctgtagtcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 aataacgggaaggctgtgtgtgagagaagtcaaaaggaggcagccaaagctgtagtcaga 333

                                                                       
Query: 121 agcaaattcctagtacttcaagtaaaaggtaagaataaagagccacagggccattaagga 180
           ||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||
Sbjct: 332 agcaaattcctagcacttcatgtaaaaggtaggaataaagagccacagagccattaagga 273

                                                                       
Query: 181 aggtggcagcaaaatgcaagagaagagaccatgggtttaaagttttaacacccaaaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggtggcagcaaaatgcaagagaagagaccatgggtttaaagttttaacacccaaaggag 213

                       
Query: 241 acggaggaagct 252
           | ||||||||||
Sbjct: 212 atggaggaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)