BAC Information

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BAC

Clone NameMSMg01-127I21
Chromosome5 (Build37)
Map Location 123,614,235 - 123,614,378
singlet/doubletsinglet
Overlap geneSetd1b
Upstream genePpp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik
Downstream geneHpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127I21.T7 (MSMg01no127_i21.b1)MSMg01-127I21.TJ (MSMg01no127_i21.g1)
ACCAG336061AG336062
length753724
length of high quality
(start - end)
145 (65 - 209)291 (66 - 356)
definitionCHROMAT_FILE: MSMg01no127_i21.b1 PHD_FILE: MSMg01no127_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:20 2005CHROMAT_FILE: MSMg01no127_i21.g1 PHD_FILE: MSMg01no127_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
TCCAAGCGACCCTAGGGAGCTGCAGGCTAGGGAGACAGTGTTGTAGCATT
GATGCCAACCAGGTGAGTGATAGTGACAGAAGTAGGGACATGATGGGGAG
GAGCCAGAGCCAGCTAGAAGGGAGACTTGGGGAGAGGGAGGACTTGGGGA
GGATTTTGACTTCTCCCTCCTATTGCCCTGCGCTTGCTGCTTCCTGCTCT
TTTCATTTCTCCCGCTCTCTATCCTTGCCTTCCTCCTCCTTCCCCCCCCT
ATCGCGCTTCCTTCTTCTCTCTCTCCCCTTCCTCCTTTTCCCTCCCAATC
TCCTTTCTTTCCCCTTCTCCTACCTTCTCCCCTTGTCTCTCGCCTCTTCT
TTCGTTTTTTTGTCCCCCCCTCTTATTTTTTCTCACTCCCCTCTACCTTT
TTCCTTTCTCTCCCTCCCTCCCCCGTCCTCTTTCTTTTTTCCCCATCCGT
CTCCTTTTCTTCCCTTTCTCCCTTTCCTTCCCTCCCTTCCTCCCCTCCCT
TTCTTCTTTCCTCCCGCCCCCCCCCCCCTTCCCCCTCCTTCCTTTCTCTT
TTCCTCCTTTTCCCTTCCTCTTTCCTCTCCTTTTCCCTCCTTTGCCTTTC
CTTTCCCCCTCCTTCCCCCCCTCCTTTTCCCTTTTTCCCCTCCTTTTCTT
TCTCCTCTTCATTTTTCCTCCCCTCTTTCTCTTCCTCTCCTCCTCCCTTC
CTT
CTGTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCCTCGTGCCTCTGCCTCCCAAGTACTGGGG
TTGCAGATTTGGCCCACCAGGTCTGGTTTATGTGGCACTGGGGATTCAGC
TCAGGGCTTTGAGCGTGGTGCTAGGTAAGCACTGTACAACCGAGCACTGT
ACAACTCCTGGAGCCCCACTGGGAACTTGTGATCTTCCTGCCTCTACTTC
CCAAGTGCTGGAATTACAGTTGTGTCACCACATCTGGCTGGAGATCTTCT
TAAATTTCATATCTATCTATCCATCTATCTATGGGGTGTGTGTGTGTGTG
TGTGTGAGACACACCACCCCCCTCTCGAATGTTACCCTATCTTTTTTTAT
TTTTCCCCCCCCACCCATTATACTCCCTCCCCTTTCTTCCCTCCTCTTCC
TTACCACTATTTCCCCCGCTTTTTTTTTCCTCTTTTTCCCCCTTTTCTTT
TCCCTCCTCTCACCACACCTATTCCACCTTCTTTTTTTTATTTTCCCGTC
TCTTCCCTCCATCTCTTTCCTACTTATTTTCCTCCCCCTTCTATTTCCTG
CCTTATTTCCTTTTTCCCACTCATCCTCCCCCTTCCACCCACCTCTTCTC
CCCTTTTTTCCCTCCCTTTTCCCCATTTTTTTTTCCCCTTCTCTTCCCCT
TTCCACTATTCCTTCCTCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_i21.b1 MSMg01no127_i21.b1 CHROMAT_FILE:
MSMg01no127_i21.b1 PHD_FILE: MSMg01no127_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:20 2005
         (145 letters)



>mm_chr5_123614035_123614579
          Length = 545

 Score =  271 bits (140), Expect = 1e-77
 Identities = 143/144 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagctgcaggctagggagacagtgttgtagcattgatgccaaccaggtgagtgatagt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gggagctgcaggctagggagacagtgttgtagcactgatgccaaccaggtgagtgatagt 260

                                                                       
Query: 61  gacagaagtagggacatgatggggaggagccagagccagctagaagggagacttggggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagaagtagggacatgatggggaggagccagagccagctagaagggagacttggggag 320

                                   
Query: 121 agggaggacttggggaggattttg 144
           ||||||||||||||||||||||||
Sbjct: 321 agggaggacttggggaggattttg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)