BAC Information

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BAC

Clone NameMSMg01-127K05
Chromosome5 (Build37)
Map Location 110,006,662 - 110,007,025
singlet/doubletsinglet
Overlap genenone
Upstream geneGak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695
Downstream geneLOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127K05.T7 (MSMg01no127_k05.b1)MSMg01-127K05.TJ (MSMg01no127_k05.g1)
ACCAG336122AG336123
length707704
length of high quality
(start - end)
368 (43 - 410)465 (75 - 539)
definitionCHROMAT_FILE: MSMg01no127_k05.b1 PHD_FILE: MSMg01no127_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:27 2005CHROMAT_FILE: MSMg01no127_k05.g1 PHD_FILE: MSMg01no127_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAA
TTCTGTCAAACACAAAGTTGGTACATACCTAACCAATATTGGGTTACAGT
GCATGTATGTAGTTTTGGAGTCATTCTCACTGATTCCTCTAGTGATGTCT
AGAAGTACCATATCTACCATCTTGTATACATTCTCCATAAAAATCTTCAC
TCATTTACTTGCTTGTGTCCTTGGGAAGAAATAAAATTCTCAAATTATTA
TTACAATTGTACTCATCATTTTTGCTTTCATTGACATTTCTGCCCTGGTA
AATTCCAATAAATTTGATTATGCAGTTGAATCTATGACCTTGCATAGAAA
GTGAGTCCCACAACAGACAGGGCTACAAATAGAAACCATCTATTAAATCA
AACAATCAGACACCCACACAATCTAAAGAATCAACAAAGATGAAATCAGA
ACACATATCCTTATTTCCAGTAGGAGCACATACATGACAGAATACTGCCT
GTTTTTTTTTTTCCAGCTATTCTTCAAGCTATTGGCCAGTAGTATAAGGT
GGAAATGTTCTTTTTTTTCTTTTTAACGCATCTTCTTCAATTACATTTCC
AATGCTATCTCAAAAGTTCTGGTCTCATTCTCCTACCCACTAATTCCCAT
TTTTTGACCCTGGCATTCCCCTGTACCGCCGCATATAACTCCTGTCTGAC
CAATGTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCAGTTGAGAATTCTTTGTTTAGCT
CTATACCCCAATTTTTATTAGCGTTATTTGATTTTCTGGAGTCCATCTTC
TTGAGTTCTTAATATATATTGGATATTAGTCCTCTATCAGATTTAGGATT
GGTAAAGATCCTTTCCCAATCTGTCGGTGGTCTTTTTGTCTTATTGACAG
TGTCTTCTGCCTTACAGAAGCTTTGAAATGTTATGAGGTCCCATTTGTCA
GTTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTT
CCCCTTTGCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCCATAAGT
TTCAATGTCCCCCCCCCCTTGATCCACTTAGACTTGAGCTTTGTACAAGG
AAATAAGAATAGATCAATTCACAATCTTCTACATGATAACTGCCAGTTGT
ACCAACACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATAGTTTTA
GCTCTCTTGTTAAAGATCATGTGACCATAGGCGTGTGGTTCCATTTCTGG
GACCTCAATTCTATTCCATTGGTCTACTTGTCTGTCGCTATACCAGTACC
ATGCATTTCTTATCACTATTGCTCCGTAGCAAAGCTTTAGGTCAGACATG
GCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_k05.b1 MSMg01no127_k05.b1 CHROMAT_FILE:
MSMg01no127_k05.b1 PHD_FILE: MSMg01no127_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:27 2005
         (368 letters)



>mm_chr5_110006458_110007225
          Length = 768

 Score =  629 bits (325), Expect = 0.0
 Identities = 355/365 (97%), Gaps = 2/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctgtcaaacacaaagttggtacatacctaaccaatattgggttacagtgcatgt 64
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 568 ggaattctgtcaaacataaagttggtacatacctaaccaatattggtttacagtgcatgt 509

                                                                       
Query: 65  atgtagttttggagtcattctcactgattcctctagtgatgtctagaagtaccatatcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atgtagttttggagtcattctcactgattcctctagtgatgtctagaagtaccatatcta 449

                                                                       
Query: 125 ccatcttgtatacattctccataaaaatcttcactcatttacttgc-ttgtgtccttggg 183
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 448 ccatcttgtatacattctccat-aaaatcttcactcatttacttgctttgtgtccttggg 390

                                                                       
Query: 184 aagaaataaaattctcaaattattattacaattgtactcatcatttttgctttcattgac 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 389 aagaaataaaattctcaaattattattacaattttactcatcatttttgctttcattgag 330

                                                                       
Query: 244 atttctgccctggtaaattccaataaatttgattatgcagttgaatctatgaccttgcat 303
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 329 atttctgccctggtaacttccaataaatttgattaggcagttgaatctatgaccttgcat 270

                                                                       
Query: 304 agaaagtgagtcccacaacagacagggctacaaatagaaaccatctattaaatcaaacaa 363
           ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 agaaagtgagttccacaacagacaggactacaaatagaaaccatctattaaatcaaacaa 210

                
Query: 364 tcaga 368
           |||||
Sbjct: 209 tcaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)