Query= MSMg01no127_n21.b1 MSMg01no127_n21.b1 CHROMAT_FILE:
MSMg01no127_n21.b1 PHD_FILE: MSMg01no127_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:46 2005
(653 letters)
>mm_chr5_47721133_47722189
Length = 1057
Score = 1131 bits (585), Expect = 0.0
Identities = 634/655 (96%), Gaps = 12/655 (1%)
Strand = Plus / Plus
Query: 6 gaattcatggatgatttc----ctgaaatatatggagatctgactatatgcacatatacc 61
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatggatga----gggactgaaatatatggagatctgactatatgcacatatacc 261
Query: 62 acaaaattttggctaaattcaagagcttttccagaaactcctaactgacatttccaattt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acaaaattttggctaaattcaagagcttttccagaaactcctaactgacatttccaattt 321
Query: 122 gacatggttaagatggattcccatatttgtgcataaaggactctagttgtgaagccagat 181
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 322 gacatggttaagatggattcccatatttgcgcataaaggactctagttgtggagccagat 381
Query: 182 gacctgaattatcatccgtgtttagagaagaaactgggactggacagactcaccactgct 241
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gacctgaattagcatccctgtttagagaagaaactgggactggacagactcaccactgct 441
Query: 242 tgcccttgttattattacattagagctaccagctcaaaagtcaatttagtgatcctttct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcccttgttattattacattagagctaccagctcaaaagtcaatttagtgatcctttct 501
Query: 302 cattcctaaggacccgaggaaaacatgtacccagaatgaccaccttttaaatttcacatt 361
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 cattcctaaggacccgaggaaaacacgtacccagaatgaccaccttttaaatttcacatt 561
Query: 362 attta-ttt-gttacttacttatttatctatgtttaacttactttgtgcacaaaataata 419
||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atttaatttagttacttatttatttatctatgtttaacttactttgtgcacaaaataata 621
Query: 420 tttccttgtaatatttccatgcagatttagtacgaattgactcctctaacttgctagagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tttccttgtaatatttccatgcagatttagtacgaattgactcctctaacttgctagagt 681
Query: 480 tctcttcttcagtgtcttagccttagccattcgtattgcatttttatacctcatgttttc 539
|| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcccttcttcagtgccttagccctagccattcgtattgcatttttatacctcatgttttc 741
Query: 540 tactactctaccaattccattctgttaaaatttaatttgtcccaatcttataggctcctt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tactactctaccaattccattctgttaaaatttaatttgtcccaatcttataggctcctt 801
Query: 600 tcaaaatttttt--ctgaactcaatctattcttattcctacataaatacacatat 652
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tcaaaattttttttctgaactcaatctattcttattcctacataaatacacatat 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1057
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1047
Effective search space: 673221
Effective search space used: 673221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_n21.g1 MSMg01no127_n21.g1 CHROMAT_FILE:
MSMg01no127_n21.g1 PHD_FILE: MSMg01no127_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:46 2005
(593 letters)
>mm_chr5_47803933_47804930
Length = 998
Score = 665 bits (344), Expect = 0.0
Identities = 351/356 (98%), Gaps = 5/356 (1%)
Strand = Plus / Minus
Query: 1 ttagaaaggaaaagaagaatcttaaattattgcctcacctttgccacccattagaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttagaaaggaaaagaagaatcttaaattattgcctcacctttgccacccattagaaaaat 297
Query: 61 ctaaacatatgcagtctactactccaacatcttatcaatctttgtgcat-----tgtata 115
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 296 ctaaacatatgcagtctactactccaacatcttatcaatctttgtgcatatttgtgtata 237
Query: 116 ttgcacaaaaacaaagaagacttataaaggctaagaacattccaaactagacttaggaaa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttgcacaaaaacaaagaagacttataaaggctaagaacattccaaactagacttaggaaa 177
Query: 176 aactacaagacccaactttacacaaagaactgcagcaaacatgagattctaaaagaggga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aactacaagacccaactttacacaaagaactgcagcaaacatgagattctaaaagaggga 117
Query: 236 gaaattgtctttaccagaaaacaaacaaacaaacaaaaccccattagttggctatccaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gaaattgtctttaccagaaaacaaacaaacaaacaaaaccccattagttggctatccaat 57
Query: 296 accagtcaaccctgaaatcataatataagaaacactatacagactgagcaagttgt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 accagtcaaccctgaaatcataatataagaaacactatacagactgagcaagttgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 998
Length adjustment: 10
Effective length of query: 583
Effective length of database: 988
Effective search space: 576004
Effective search space used: 576004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
